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[190022_at] zinc finger protein

Description ZK697.2 /REP_DB=WormBase Gene ID /WP=CE15397 /TR=O44577 /GB=AAC48245.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 56      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_highest_nonorm > 92      6grp_total > 57      4grp_total > 03      6grp_highest_sub > Cu      6grp_cgc > 37      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1068
1 2 3 4 range
A 518.2
(-1.7)
P 		297.8
(-3)
P 		381.6
(-2.5)
P 		1325
(3)
P 		1027
B 509.4
(-1.9)
P 		360.3
(-2.8)
P 		319.9
(-3)
P 		1365.9
(3)
P 		1046
C 459.3
(-2.1)
P 		363.8
(-2.7)
P 		315.2
(-3)
P 		1306.4
(3)
P 		991
avr 495.6
(-2.1) 		340.6
(-3) 		338.9
(-3) 		1332.4
(3) 		994

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 336
1 2 3 4 5 6 range
A 313.5
(-0.7)
P 		345.2
(-0)
P 		279.7
(-1.5)
P 		253.8
(-2)
P 		210.6
(-3)
P 		482.4
(3)
P 		272
B 367.8
(0)
P 		332.4
(-0.8)
P 		280.2
(-1.9)
P 		231.6
(-3)
P 		278.2
(-2)
P 		500.5
(3)
P 		269
C 323.5
(-1.5)
P 		332.6
(-1.3)
P 		300.8
(-2)
P 		304.6
(-1.9)
P 		248.8
(-3)
P 		546.1
(3)
P 		297
avr 334.9
(-1) 		336.7
(-0.9) 		286.9
(-2.1) 		263.3
(-2.6) 		245.9
(-3) 		509.7
(3) 		264
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 188.7
(2.8)
P 		64.6
(-3)
P 		99.7
(-1.4)
P 		194
(3)
P 		129
B 162.4
(-0.6)
P 		89
(-2.6)
P 		74.1
(-3)
P 		291.1
(3)
P 		217
C 152
(-0.5)
P 		104.6
(-3)
P 		109.9
(-2.7)
P 		220.3
(3)
P 		116
avr 167.7
(0.3) 		86.1
(-3) 		94.6
(-2.7) 		235.1
(3) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 57.8
(-3)
P 		122.8
(3)
P 		60.9
(-2.7)
P 		64.4
(-2.4)
P 		63.6
(-2.5)
P 		117.5
(2.5)
P 		65
B 128
(0.2)
P 		110.7
(-0.6)
P 		68
(-2.7)
P 		61.4
(-3)
P 		113
(-0.5)
P 		186.6
(3)
P 		125
C 119.9
(-0.1)
P 		101.5
(-1)
P 		76.6
(-2.2)
P 		61.3
(-3)
P 		80.5
(-2.1)
P 		182.8
(3)
P 		122
avr 101.9
(-0.6) 		111.7
(-0) 		68.5
(-2.6) 		62.4
(-3) 		85.7
(-1.6) 		162.3
(3) 		100
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190022_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15453
Sequence Type Exemplar sequence
Representative Public ID ZK697.2 NCBI
Target Description ZK697.2 /REP_DB=WormBase Gene ID /WP=CE15397 /TR=O44577 /GB=AAC48245.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071094(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071094 NCBI Caenorhabditis elegans ZK697.2 (ZK697.2) mRNA, complete cds. 11/11 None
SNAP00000036768 ENSEMBL cdna:SNAP chromosome:CEL140:V:1745848:1747709:1 11/11 None
GENEFINDER00000036773 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1743643:1747709:1 11/11 None
ZK697.2 ENSEMBL cdna:known chromosome:CEL140:V:1743643:1747709:1 gene:ZK697.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1743642-1747709(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol nhr-256
Ensembl ZK697.2
Entrez Gene 191409 Entrez gene
SwissProt O44577 EMBL-EBI
WormBase CE15397 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC48245 Hypothetical protein ZK697.2 [Caenorhabditis elegans] ref|NP_503495.1| ZK697.2 [Caenorhabditis elegans] 0.0
blast AAC48245 Hypothetical protein ZK697.2 [Caenorhabditis elegans] ref|NP_503495.1| ZK697.2 [Caenorhabditis elegans] 1.0E-175
blast CAE62456 Hypothetical protein CBG06550 [Caenorhabditis briggsae] 1.0E-150
blast CAB04850 Hypothetical protein T26H2.9 [Caenorhabditis elegans] ref|NP_507734.4| Nuclear Hormone Receptor family member (nhr-79) [Caenorhabditis elegans] 1.0E-133
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 6.4E-14
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.4E-25
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 6.4E-14
Sequence
Target Sequence 
>C. ELEGANS:190022_AT
gactacgtgaatcggttccccgagttccatctgctgaataaatccgagaaaactgtgcta
ttccaaactacggctgcagttgacgcacttgcggatccagcttattatagtcaggtaatc
tacccggatgagccagtttttgtgacgcgagaagccaaatatctgaaaatggatcctatg
ccatctacggaacttgaagtggtgccccaagattgtaatttagaagatattactatttat
aaaaatgtcgtgctaatgattcggcggcaatggaagaatgttaacgagccattgagaaag
ctgaaattatccctcgcagagttttcattgtttaaagcattagcgatttggcattataat
tactacaaactccaaaacacgggtcgtcaaatctcggctcgccaacgcgatgacattttc
cgaacacttctcctcatatgcgaagatgaaggatatgatgatccgattctcagagtatct
gaaatcgttctggccgtaggaattgtgatgtcagaggttcatgagctcgtgactacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTACGTGAATCGGTTCCCCGAGT 441 255 700 Antisense
CTGTGCTATTCCAAACTACGGCTGC 588 239 752 Antisense
CGCACTTGCGGATCCAGCTTATTAT 153 255 783 Antisense
CAGGTAATCTACCCGGATGAGCCAG 348 205 811 Antisense
GATGAGCCAGTTTTTGTGACGCGAG 401 411 826 Antisense
GGATCCTATGCCATCTACGGAACTT 31 513 870 Antisense
AATGTCGTGCTAATGATTCGGCGGC 397 163 943 Antisense
AAACACGGGTCGTCAAATCTCGGCT 622 127 1074 Antisense
TCGCCAACGCGATGACATTTTCCGA 239 599 1098 Antisense
GTATCTGAAATCGTTCTGGCCGTAG 244 453 1174 Antisense
GAGGTTCATGAGCTCGTGACTACGA 184 401 1213 Antisense
Sequence Source Affymetrix Proprietary Database