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[190021_at]

Description C53D5.4 /REP_DB=WormBase Gene ID /WP=CE28215 /TR=Q9N5V6 /GB=AAF39786.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 31      4grp_high_8_8 > 34      6grp_highest_nonorm > 90      6grp_total > 42      4grp_total > 54      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 211.7
(3)
P 		154.1
(-0.6)
P 		150.2
(-0.8)
P 		115
(-3)
P 		97
B 214
(3)
P 		174.4
(0.5)
P 		120
(-3)
P 		150.8
(-1)
P 		94
C 185.2
(3)
P 		146.3
(1.3)
P 		135.3
(0.8)
P 		48.7
(-3)
A 		137
avr 203.6
(3) 		158.3
(0.2) 		135.2
(-1.2) 		104.8
(-3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 175.7
(3)
P 		137.9
(-2.6)
P 		137.6
(-2.7)
P 		152.5
(-0.5)
P 		161
(0.8)
P 		135.5
(-3)
P 		40
B 175.3
(0.3)
P 		169
(-0.1)
P 		223
(3)
P 		173.7
(0.2)
P 		211.8
(2.4)
P 		118.6
(-3)
P 		104
C 153.4
(-2.3)
P 		175.8
(0.3)
P 		198.2
(3)
P 		152.1
(-2.5)
P 		147.9
(-3)
P 		154.8
(-2.2)
P 		50
avr 168.1
(0.8) 		160.9
(-0) 		186.3
(3) 		159.4
(-0.2) 		173.6
(1.5) 		136.3
(-3) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 77.1
(3)
P 		33.5
(-1.3)
P 		39.3
(-0.8)
P 		16.8
(-3)
P 		60
B 68.2
(3)
P 		43.1
(-0.7)
P 		27.8
(-3)
P 		32.1
(-2.4)
P 		40
C 61.3
(3)
P 		42.1
(0.8)
P 		47.2
(1.4)
P 		8.2
(-3)
A 		53
avr 68.9
(3) 		39.6
(-0.5) 		38.1
(-0.7) 		19
(-3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 32.4
(-2.2)
P 		49
(3)
P 		30
(-3)
P 		38.7
(-0.3)
P 		48.6
(2.9)
P 		33
(-2.1)
P 		19
B 61
(-0.6)
P 		56.3
(-1.3)
P 		54.2
(-1.6)
P 		46
(-2.7)
P 		86.1
(3)
P 		44.2
(-3)
P 		42
C 56.8
(3)
P 		53.7
(2.3)
P 		50.4
(1.5)
P 		30.6
(-3)
P 		47.9
(1)
P 		51.8
(1.9)
P 		26
avr 50.1
(0.1) 		53
(0.9) 		44.9
(-1.3) 		38.4
(-3) 		60.9
(3) 		43
(-1.8) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190021_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2546
Sequence Type Exemplar sequence
Representative Public ID C53D5.4 NCBI
Target Description C53D5.4 /REP_DB=WormBase Gene ID /WP=CE28215 /TR=Q9N5V6 /GB=AAF39786.2 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058310
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000029140 ENSEMBL cdna:SNAP chromosome:CEL140:I:286352:289075:-1 11/11 None
GENEFINDER00000029152 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:286352:289075:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058310 7/11 Cross Hyb Matching Probes B 
C53D5.4 7/11 Cross Hyb Matching Probes B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:286370-289075(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39786 Hypothetical protein C53D5.4 [Caenorhabditis elegans] ref|NP_490711.1| C53D5.4 [Caenorhabditis elegans] 1.0E-158
blast AAF39786 Hypothetical protein C53D5.4 [Caenorhabditis elegans] ref|NP_490711.1| C53D5.4 [Caenorhabditis elegans] 1.0E-155
blast CAE74352 Hypothetical protein CBG22071 [Caenorhabditis briggsae] 1.0E-29
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 7.0E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.1E-4
Sequence
Target Sequence 
>C. ELEGANS:190021_AT
tctccctcaatcaagtagtcgacgcggatgctcaacaacgattcgacctggaacttctga
aaatgttcggcgccgggaatattccccattttcagccaccaccagacctctatcagcacc
atcacattcctcacacgtcacaacaggtggctcaggagaatctagcaatgttggcgaatg
taccaaaattagatgacaataacgcgtatttcgacactttttcaccggaaaaatcgggga
aaagggcgaaaaaacgggcggccccgtcgtcggctcacgaggcccagcccaacaatggac
cttataaatgtcgagactgcgagaaaactttccggcaaaagcatgggctcaatcaacact
tgctcactcatgagacgaatggagcatttgagtgtgatgggtgtgggaagcgatattcga
gacaagaaagtgtttatcgacatcagagaagcaccgccgaatgctcaaaatatcttccgt
tggctctaatcaatggcacggtcgcccgaaatcccgtcgccacgtgggatacaccaactg
ctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCCTCAATCAAGTAGTCGACGC 670 609 401 Antisense
CGCGGATGCTCAACAACGATTCGAC 552 255 423 Antisense
AACGATTCGACCTGGAACTTCTGAA 345 145 437 Antisense
GCGCCGGGAATATTCCCCATTTTCA 616 287 470 Antisense
ATTCCTCACACGTCACAACAGGTGG 578 7 526 Antisense
CGCGTATTTCGACACTTTTTCACCG 505 243 603 Antisense
TCAATCAACACTTGCTCACTCATGA 328 633 749 Antisense
GAGAAGCACCGCCGAATGCTCAAAA 43 393 846 Antisense
ATCTTCCGTTGGCTCTAATCAATGG 298 31 872 Antisense
TAATCAATGGCACGGTCGCCCGAAA 485 633 887 Antisense
GCCACGTGGGATACACCAACTGCTG 431 279 919 Antisense
Sequence Source Affymetrix Proprietary Database