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[190020_at] glycosyltransferase

Description T23F2.1 /REP_DB=WormBase Gene ID /WP=CE28488 /TR=Q22698 /GB=AAA80383.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=glycosyltransferase
Cluster 6grp_total > 20      4grp_total > 49      6grp_cgc > 63      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2828
1 2 3 4 range
A 30.9
(-3)
A 		2585.2
(3)
P 		2569
(3)
P 		22.4
(-3)
A 		2563
B 14.2
(-3)
A 		2613.5
(2.5)
P 		2842.3
(3)
P 		19.1
(-3)
A 		2828
C 21.9
(-3)
A 		2438.4
(2.5)
P 		2672.5
(3)
P 		24.4
(-3)
A 		2651
avr 22.3
(-3) 		2545.7
(2.7) 		2694.6
(3) 		22
(-3) 		2673

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1172
1 2 3 4 5 6 range
A 281.2
(-2.7)
A 		1300.6
(3)
P 		644.2
(-0.7)
P 		512.8
(-1.4)
P 		503.3
(-1.5)
P 		231.1
(-3)
A 		1070
B 282.2
(-1.8)
A 		915.4
(3)
P 		671.9
(1.1)
P 		525.9
(0)
P 		390.4
(-1)
A 		128.8
(-3)
A 		787
C 352.5
(-1.5)
A 		807.1
(3)
P 		717.7
(2.1)
P 		610.9
(1.1)
P 		588.1
(0.9)
P 		194.3
(-3)
A 		613
avr 305.3
(-2.1) 		1007.7
(3) 		677.9
(0.6) 		549.9
(-0.3) 		493.9
(-0.7) 		184.7
(-3) 		823
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 928
1 2 3 4 range
A 11.3
(-2.9)
A 		561.2
(2)
P 		671.6
(3)
P 		3.3
(-3)
A 		668
B 4.5
(-3)
A 		645.5
(2.9)
P 		658.6
(3)
P 		4.1
(-3)
A 		655
C 7.2
(-3)
A 		701.1
(1.5)
P 		931.4
(3)
P 		4.1
(-3)
A 		927
avr 7.7
(-3) 		635.9
(2.1) 		753.9
(3) 		3.8
(-3) 		750

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 415
1 2 3 4 5 6 range
A 51.8
(-3)
A 		462.6
(3)
P 		140.3
(-1.7)
P 		130.1
(-1.9)
P 		151.9
(-1.5)
P 		56.3
(-2.9)
A 		411
B 98.2
(-1.8)
A 		304.7
(3)
P 		163.2
(-0.3)
P 		139.3
(-0.9)
P 		158.6
(-0.4)
A 		48
(-3)
A 		257
C 130.7
(-0.8)
A 		246.3
(3)
P 		182.7
(0.9)
P 		122.8
(-1.1)
P 		190.3
(1.1)
P 		65
(-3)
A 		181
avr 93.6
(-2.2) 		337.9
(3) 		162.1
(-0.7) 		130.7
(-1.4) 		166.9
(-0.6) 		56.4
(-3) 		282
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190020_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16687
Sequence Type Exemplar sequence
Representative Public ID T23F2.1 NCBI
Target Description T23F2.1 /REP_DB=WormBase Gene ID /WP=CE28488 /TR=Q22698 /GB=AAA80383.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=glycosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076531(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076531 NCBI Caenorhabditis elegans T23F2.1 (glycosyltransferase) mRNA, complete cds. 11/11 None
SNAP00000015213 ENSEMBL cdna:SNAP chromosome:CEL140:X:5493069:5495511:1 11/11 None
GENEFINDER00000015221 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5493354:5495511:1 11/11 None
T23F2.1 ENSEMBL cdna:known chromosome:CEL140:X:5492940:5495964:1 gene:T23F2.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5493068-5495511(+) 100.0 100.0
Public Domain and Genome References
Gene Title glycosyltransferase
Gene Symbol tag-249
Ensembl T23F2.1
Entrez Gene 180821 Entrez gene
SwissProt Q22698 EMBL-EBI
WormBase CE28488 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
9058 biosynthesis inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA80383 Temporarily assigned gene name protein 249 [Caenorhabditis elegans] ref|NP_508932.1| T23F2.1 [Caenorhabditis elegans] 0.0
blast CAE68759 Hypothetical protein CBG14694 [Caenorhabditis briggsae] 0.0
blast XP_794663 PREDICTED: similar to alpha-1,3-mannosyltransferase ALG2 isoform 1 [Strongylocentrotus purpuratus] 1.0E-42
blast XP_794663 PREDICTED: similar to alpha-1,3-mannosyltransferase ALG2 isoform 1 [Strongylocentrotus purpuratus] 7.0E-42
Protein Domains
Database ID Description E-Value
Pfam IPR001296 EMBL-EBI Glycosyl transferase, group 1 9.1E-25
Pfam IPR001296 EMBL-EBI Glycosyl transferase, group 1 8.4E-24
Pfam IPR001296 EMBL-EBI Glycosyl transferase, group 1 9.1E-25
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000015213 1 9-31
Sequence
Target Sequence 
>C. ELEGANS:190020_AT
atatcacttccatgttcaacttgccggatctgtcatgccacacattccggaaagtagaat
atattatgaggttcttcagagaatgactgaggagctcaatgttactgatatggtcacatt
catcccttcgccgactgacaaggtgaagtttcagctgtatcaacaatgtgatacagcgct
ctacacaccgcctaacgagcatttcggaattgtcccaattgaggctttggatcaaagaag
accggttattgtctgtgatagtggaggcccagctgaaaccgtcttggaagatattacagg
aaccaagattgccaagccatgtggcgagcttttggccgaagccatgcttcaccatatgaa
caaacgtgattggccagaactggacacagatgagggatacgctaaacagcggcatcgcct
tgaaaccgaattctccacgcgcggattttgtgggaatatcgaccgagccattgccgaaat
gatgggaacgttggagatcagctcatcggagccaacgacaacgccgctcgtggacacaat
agttcatcagccaactgccactgaagtctattcgaagcctcaacagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCACTTCCATGTTCAACTTGCC 692 19 840 Antisense
CGGATCTGTCATGCCACACATTCCG 520 243 864 Antisense
CTGATATGGTCACATTCATCCCTTC 449 237 944 Antisense
ATCCCTTCGCCGACTGACAAGGTGA 583 37 961 Antisense
ACACACCGCCTAACGAGCATTTCGG 335 111 1022 Antisense
GCGAGCTTTTGGCCGAAGCCATGCT 299 289 1163 Antisense
GGCATCGCCTTGAAACCGAATTCTC 674 535 1250 Antisense
ATATCGACCGAGCCATTGCCGAAAT 463 19 1295 Antisense
AACGCCGCTCGTGGACACAATAGTT 38 147 1359 Antisense
AATAGTTCATCAGCCAACTGCCACT 525 173 1377 Antisense
GAAGTCTATTCGAAGCCTCAACAGT 405 333 1402 Antisense
Sequence Source Affymetrix Proprietary Database