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[190017_at] zinc finger protein

Description C45G7.4 /REP_DB=WormBase Gene ID /WP=CE17550 /TR=O76354 /GB=AAC19182.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_high1_10_10 > 06      6grp_total > 06      4grp_total > 45      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 177.2
(3)
P 		157.6
(2)
P 		92.2
(-1.2)
P 		55.9
(-3)
A 		121
B 215.8
(3)
P 		192.9
(2.1)
P 		88.3
(-2)
P 		62.6
(-3)
M 		153
C 250.2
(3)
P 		157.9
(0.2)
P 		95.5
(-1.7)
P 		53
(-3)
A 		197
avr 214.4
(3) 		169.5
(1.3) 		92
(-1.7) 		57.2
(-3) 		157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 206
1 2 3 4 5 6 range
A 232.2
(3)
P 		160.4
(0.2)
P 		116.8
(-1.5)
P 		97.2
(-2.2)
P 		110.4
(-1.7)
P 		77.3
(-3)
P 		155
B 202.3
(3)
P 		177.7
(1.9)
P 		105.5
(-1.3)
P 		158
(1)
P 		86.5
(-2.2)
P 		68.2
(-3)
P 		134
C 273.7
(3)
P 		144.7
(-0.9)
P 		133.7
(-1.2)
P 		120
(-1.6)
P 		75.5
(-3)
P 		75.3
(-3)
M 		198
avr 236.1
(3) 		160.9
(0.2) 		118.7
(-1.3) 		125.1
(-1.1) 		90.8
(-2.4) 		73.6
(-3) 		163
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 64.5
(3)
P 		34.2
(-0.2)
P 		24.1
(-1.3)
P 		8.2
(-3)
A 		56
B 68.8
(3)
P 		47.6
(0.7)
P 		20.5
(-2.2)
P 		13.4
(-3)
M 		55
C 82.8
(3)
P 		45.4
(-0)
P 		33.3
(-1)
P 		8.9
(-3)
A 		74
avr 72
(3) 		42.4
(0.1) 		26
(-1.5) 		10.2
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 42.8
(0.8)
P 		57.1
(3)
P 		25.4
(-2)
P 		24.6
(-2.1)
P 		33.3
(-0.7)
P 		18.8
(-3)
P 		38
B 70.4
(3)
P 		59.1
(1.5)
P 		25.6
(-3)
P 		41.8
(-0.8)
P 		35.2
(-1.7)
P 		25.4
(-3)
P 		45
C 101.4
(3)
P 		44.1
(-1.4)
P 		34
(-2.2)
P 		24.1
(-3)
P 		24.4
(-3)
P 		25.2
(-2.9)
M 		77
avr 71.5
(3) 		53.4
(0.8) 		28.3
(-2.4) 		30.2
(-2.1) 		31
(-2) 		23.1
(-3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190017_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10411
Sequence Type Exemplar sequence
Representative Public ID C45G7.4 NCBI
Target Description C45G7.4 /REP_DB=WormBase Gene ID /WP=CE17550 /TR=O76354 /GB=AAC19182.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067802(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067802 NCBI Caenorhabditis elegans C45G7.4 (C45G7.4) mRNA, complete cds. 11/11 None
SNAP00000040031 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2432998:2443421:1 11/11 None
GENEFINDER00000040038 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2432998:2436366:1 11/11 None
C45G7.4 ENSEMBL cdna:known chromosome:CEL140:IV:2432991:2436428:1 gene:C45G7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2433003-2436372(+) 98.73 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Ensembl C45G7.4
Entrez Gene 177032 Entrez gene
SwissProt O76354 EMBL-EBI
WormBase CE17550 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500203 C45G7.4 [Caenorhabditis elegans] gb|AAC19182.1| Hypothetical protein C45G7.4 [Caenorhabditis elegans] 0.0
blast CAE74739 Hypothetical protein CBG22559 [Caenorhabditis briggsae] 0.0
blast CAE66700 Hypothetical protein CBG12045 [Caenorhabditis briggsae] 3.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.9E-8
Sequence
Target Sequence 
>C. ELEGANS:190017_AT
atttcatcactctacagtatcctccaaggataccgtaacccagcgaaagcagaagatcat
gtcctgcgcccacgcaactacttccatgcttgacatggatcttactcaagtttcgatggt
gccgatctttgcggatgttcttctcaactgcttctaccaactcaaccggctatctaaaaa
caagttcgtcggggataagaagtaccgaagatgtgacatttggaagcaggttcagtgcag
ttatactgaactttttggcatcactgccaagcacttcccatcccatcatccggagagagt
cgatattttggatgatttggcgtacttgtgtcatttgtatagtgatgtcgcggatcaggg
caccgtcacaatctgcctaatcgaagctgcccgcgccagagcttcagactccagtggcct
aactgaaattgagcagcaaagatccgaagaacgtctggaactgattgatgagcatttgac
agaatgccggcggctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCATCACTCTACAGTATCCTCC 112 17 1212 Antisense
AGCAGAAGATCATGTCCTGCGCCCA 622 75 1259 Antisense
CGCAACTACTTCCATGCTTGACATG 23 255 1284 Antisense
AAGTTTCGATGGTGCCGATCTTTGC 361 157 1319 Antisense
GATCTTTGCGGATGTTCTTCTCAAC 613 419 1335 Antisense
TCTACCAACTCAACCGGCTATCTAA 583 611 1364 Antisense
CCCATCCCATCATCCGGAGAGAGTC 333 259 1488 Antisense
GATTTGGCGTACTTGTGTCATTTGT 173 427 1525 Antisense
ACAATCTGCCTAATCGAAGCTGCCC 75 115 1579 Antisense
GCCAGAGCTTCAGACTCCAGTGGCC 705 277 1606 Antisense
ATTTGACAGAATGCCGGCGGCTCCA 380 17 1685 Antisense
Sequence Source Affymetrix Proprietary Database