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[190016_at] zinc finger protein

Description C33G8.9 /REP_DB=WormBase Gene ID /WP=CE06918 /TR=Q18394 /GB=AAC25851.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 62      4grp_total > 04      6grp_cgc > 83      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 71.9
(0.4)
P 		32.4
(-3)
A 		49.4
(-1.5)
A 		102.3
(3)
P 		70
B 48.6
(-3)
M 		49.2
(-2.9)
A 		56.7
(-1.6)
A 		83.6
(3)
P 		35
C 52.8
(0.7)
P 		60.9
(3)
M 		39.7
(-3)
A 		54.6
(1.2)
M 		21
avr 57.8
(-1.1) 		47.5
(-3) 		48.6
(-2.8) 		80.2
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 92
1 2 3 4 5 6 range
A 23.8
(-3)
A 		80.1
(3)
A 		71.8
(2.1)
P 		41.6
(-1.1)
A 		53.5
(0.2)
P 		31.5
(-2.2)
A 		56
B 55.7
(-1.6)
P 		49.8
(-2.1)
A 		114.1
(3)
M 		66.5
(-0.8)
A 		46.6
(-2.4)
A 		38.5
(-3)
A 		76
C 60.9
(-1.5)
P 		76.7
(-0.2)
P 		90.7
(0.9)
M 		115.7
(3)
A 		54.5
(-2.1)
M 		43.3
(-3)
P 		72
avr 46.8
(-2) 		68.9
(0.4) 		92.2
(3) 		74.6
(1.1) 		51.5
(-1.5) 		37.8
(-3) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 26.2
(3)
P 		7
(-3)
A 		12.9
(-1.2)
A 		15
(-0.5)
P 		19
B 15.5
(0.6)
M 		12.1
(-3)
A 		13.1
(-1.9)
A 		17.8
(3)
P 		6
C 17.5
(3)
P 		17.5
(3)
M 		13.8
(0.3)
A 		9.2
(-3)
M 		8
avr 19.7
(3) 		12.2
(-3) 		13.3
(-2.1) 		14
(-1.6) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 4.4
(-3)
A 		28.5
(3)
A 		15.6
(-0.2)
P 		10.5
(-1.5)
A 		16.1
(-0.1)
P 		7.7
(-2.2)
A 		24
B 19.4
(-0.7)
P 		16.6
(-2)
A 		27.7
(3)
M 		17.6
(-1.5)
A 		18.9
(-0.9)
A 		14.3
(-3)
A 		13
C 22.6
(2.5)
P 		23.4
(3)
P 		23.1
(2.8)
M 		23.3
(2.9)
A 		17.6
(-0.9)
M 		14.5
(-3)
P 		9
avr 15.5
(-1.1) 		22.8
(3) 		22.1
(2.6) 		17.1
(-0.2) 		17.5
(-0) 		12.2
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190016_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12262
Sequence Type Exemplar sequence
Representative Public ID C33G8.9 NCBI
Target Description C33G8.9 /REP_DB=WormBase Gene ID /WP=CE06918 /TR=Q18394 /GB=AAC25851.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072367(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072367 NCBI Caenorhabditis elegans C33G8.9 (C33G8.9) mRNA, complete cds. 11/11 None
SNAP00000000529 ENSEMBL cdna:SNAP chromosome:CEL140:V:6990558:6992244:-1 11/11 None
GENEFINDER00000000541 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6987714:6992244:-1 11/11 None
C33G8.9 ENSEMBL cdna:known chromosome:CEL140:V:6990478:6992269:-1 gene:C33G8.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042800 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6990558-6992245(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol nhr-140
Ensembl C33G8.9
Entrez Gene 3565647 Entrez gene
SwissProt Q18394 EMBL-EBI
WormBase CE06918 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC25851 Hypothetical protein C33G8.9 [Caenorhabditis elegans] ref|NP_504768.1| C33G8.9 [Caenorhabditis elegans] 0.0
blast AAC25852 Hypothetical protein C33G8.8 [Caenorhabditis elegans] ref|NP_504767.1| C33G8.8 [Caenorhabditis elegans] 0.0
blast AAC25853 Hypothetical protein C33G8.10 [Caenorhabditis elegans] ref|NP_504769.1| C33G8.10 [Caenorhabditis elegans] 1.0E-116
blast AAC25856 Hypothetical protein C33G8.12 [Caenorhabditis elegans] ref|NP_504766.1| C33G8.12 [Caenorhabditis elegans] 1.0E-114
blast AAC25852 Hypothetical protein C33G8.8 [Caenorhabditis elegans] ref|NP_504767.1| C33G8.8 [Caenorhabditis elegans] 1.0E-101
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 2.9E-9
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.5E-4
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 9.3E-9
Sequence
Target Sequence 
>C. ELEGANS:190016_AT
cactactattttttgggatcttgccgaatcaatattttctgaaattggactcttgaactc
ggatgataaagatgccctcctctgcaactttttcccacgatggatgcttatggaggctgc
catagaatattgtaagaattatgagcaccattggaaaatgatcgaaacagacgggttgga
taatatgctactggtgttttacggatcatcaatgccaaaagaaaaacgactggatgatga
taaaataatccaaatttttcgtccatattggaccaggttttatatagaaatcgcagagcc
tatacatcaggagaagtgtgataaagtcgagtttatggctttgtttttattaatcctttt
tgatgatgcctatttaaacattagtgaagaagctgcaaagctgtgtcgtaacttgcaaaa
agtgattctacgtgagctgaaaggatatcaaatggacaataattgctctgaaatgagatt
tatggatgtgatctcaaaactctcgctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTACTATTTTTTGGGATCTTGCC 567 197 438 Antisense
TGAAATTGGACTCTTGAACTCGGAT 476 571 477 Antisense
GGATGATAAAGATGCCCTCCTCTGC 679 513 498 Antisense
TCTGCAACTTTTTCCCACGATGGAT 294 609 518 Antisense
ACGATGGATGCTTATGGAGGCTGCC 281 93 534 Antisense
GCTACTGGTGTTTTACGGATCATCA 612 301 624 Antisense
ATAATCCAAATTTTTCGTCCATATT 226 25 682 Antisense
AGAAATCGCAGAGCCTATACATCAG 202 73 723 Antisense
TATGGCTTTGTTTTTATTAATCCTT 354 655 771 Antisense
AGCTGCAAAGCTGTGTCGTAACTTG 302 81 828 Antisense
GGATGTGATCTCAAAACTCTCGCTT 372 515 921 Antisense
Sequence Source Affymetrix Proprietary Database