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[190014_at]

Description B0432.9 /REP_DB=WormBase Gene ID /WP=CE07747 /TR=P90990 /GB=AAB37893.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 79      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 5.4
(-2.2)
A 		20.2
(3)
A 		5.4
(-2.2)
A 		3.1
(-3)
A 		17
B 3.9
(-2.8)
A 		2.6
(-3)
A 		2.5
(-3)
A 		38.6
(3)
A 		36
C 4
(-3)
A 		12.3
(-1.4)
A 		5.1
(-2.8)
A 		34.5
(3)
A 		31
avr 4.4
(-3) 		11.7
(-0.9) 		4.3
(-3) 		25.4
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 34
(0)
A 		33.5
(-0)
A 		10.8
(-2.5)
A 		6
(-3)
A 		8.8
(-2.7)
A 		61.5
(3)
A 		56
B 8.9
(-2.6)
A 		41.6
(1.4)
A 		28
(-0.3)
A 		5.5
(-3)
A 		54.6
(3)
A 		47.1
(2.1)
A 		49
C 5
(-3)
A 		41.1
(1.9)
A 		28.6
(0.2)
A 		23.9
(-0.4)
A 		10.2
(-2.3)
A 		49.1
(3)
P 		44
avr 16
(-2.4) 		38.7
(1) 		22.5
(-1.4) 		11.8
(-3) 		24.5
(-1.1) 		52.6
(3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 2
(-0.7)
A 		4.4
(3)
A 		1.4
(-1.6)
A 		0.5
(-3)
A 		4
B 1.2
(-2.5)
A 		0.6
(-3)
A 		0.6
(-3)
A 		8.2
(3)
A 		8
C 1.3
(-3)
A 		3.5
(-0.1)
A 		1.8
(-2.3)
A 		5.8
(3)
A 		5
avr 1.5
(-2.7) 		2.8
(-0.4) 		1.3
(-3) 		4.8
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 6.3
(-0.9)
A 		11.9
(1.6)
A 		2.3
(-2.6)
A 		1.5
(-3)
A 		2.6
(-2.5)
A 		15
(3)
A 		14
B 3.1
(-2.5)
A 		13.9
(0.6)
A 		6.8
(-1.5)
A 		1.5
(-3)
A 		22.2
(3)
A 		17.6
(1.7)
A 		21
C 1.9
(-3)
A 		12.5
(1.4)
A 		7.3
(-0.8)
A 		4.8
(-1.8)
A 		3.3
(-2.4)
A 		16.4
(3)
P 		15
avr 3.8
(-2.5) 		12.8
(1.5) 		5.5
(-1.7) 		2.6
(-3) 		9.4
(-0) 		16.3
(3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190014_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5576
Sequence Type Exemplar sequence
Representative Public ID B0432.9 NCBI
Target Description B0432.9 /REP_DB=WormBase Gene ID /WP=CE07747 /TR=P90990 /GB=AAB37893.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170969(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170969 NCBI Caenorhabditis elegans B0432.13 (B0432.13) mRNA, complete cds. 11/11 None
SNAP00000033638 ENSEMBL cdna:SNAP chromosome:CEL140:II:276860:285216:-1 9/11 None
GENEFINDER00000033649 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:279733:283682:-1 11/11 None
B0432.13 ENSEMBL cdna:known chromosome:CEL140:II:281154:282575:-1 gene:B0432.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:281153-283682(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0432.13
Entrez Gene 173412 Entrez gene
SwissProt P90990 EMBL-EBI
WormBase CE29945 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37894 Hypothetical protein B0432.8 [Caenorhabditis elegans] ref|NP_493691.2| B0432.8 [Caenorhabditis elegans] 1.0E-141
blast AAB37893 Hypothetical protein B0432.13 [Caenorhabditis elegans] ref|NP_740965.1| B0432.13 [Caenorhabditis elegans] 1.0E-138
blast AAB37893 Hypothetical protein B0432.13 [Caenorhabditis elegans] ref|NP_740965.1| B0432.13 [Caenorhabditis elegans] 1.0E-137
blast AAB37893 Hypothetical protein B0432.13 [Caenorhabditis elegans] ref|NP_740965.1| B0432.13 [Caenorhabditis elegans] 1.0E-110
blast AAB37895 Hypothetical protein B0432.10 [Caenorhabditis elegans] ref|NP_493693.1| B0432.10 [Caenorhabditis elegans] 1.0E-105
blast CAE62842 Hypothetical protein CBG07021 [Caenorhabditis briggsae] 1.0E-102
blast AAL32206 Hypothetical protein B0432.9 [Caenorhabditis elegans] ref|NP_493692.3| B0432.9 [Caenorhabditis elegans] 3.0E-94
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.7E-12
Pfam IPR001130 EMBL-EBI TatD-related deoxyribonuclease 3.2E-62
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.7E-12
Pfam IPR001279 EMBL-EBI Beta-lactamase-like 1.9E-13
Pfam IPR001841 EMBL-EBI Zn-finger, RING 3.7E-12
Pfam IPR001279 EMBL-EBI Beta-lactamase-like 7.2E-13
Sequence
Target Sequence 
>C. ELEGANS:190014_AT
cacagtggatcgcgacaaaacggcaatgtccgagttgccgacggacggtaccgaagaatg
gatttgtggagaagctgttctttgatgtacaacgaatgggtggagaagctgaaaaaccac
cggagattgactatcgggaagagcactacaagctctcgacatcgctgaaagtggagcagg
aaaagctgggaacactgaacacggagaataagaacttaaaggatactgtaaagtcgttgg
agaagaaaatcattcgggaaaaggacaaatatcgtcaggaaattccgaaattgcaggcaa
caatcaaccatttgactatatcatcagaagaaactgcatatttgaaacgggagcttcaag
agtcgaaaaatagacttaaaacttgtgaattctacaaaatccttactgtacatagctcgg
aagccgacaagcaactcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACAGTGGATCGCGACAAAACGGCA 118 197 671 Antisense
GGCAATGTCCGAGTTGCCGACGGAC 173 533 692 Antisense
GCCGACGGACGGTACCGAAGAATGG 278 283 707 Antisense
GAAGCTGTTCTTTGATGTACAACGA 58 343 741 Antisense
GAAAAACCACCGGAGATTGACTATC 544 353 781 Antisense
GACTATCGGGAAGAGCACTACAAGC 660 371 799 Antisense
CTACAAGCTCTCGACATCGCTGAAA 458 227 816 Antisense
AAAGCTGGGAACACTGAACACGGAG 395 121 852 Antisense
TGCAGGCAACAATCAACCATTTGAC 218 579 962 Antisense
AAATCCTTACTGTACATAGCTCGGA 703 117 1067 Antisense
GCTCGGAAGCCGACAAGCAACTCGG 227 299 1085 Antisense
Sequence Source Affymetrix Proprietary Database