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[190012_s_at]

Description C05D2.6 /REP_DB=WormBase Gene ID /WP=CE26864 /TR=O45133 /GB=AAK67208.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=human LIS-1 protein
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 84      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 86      6grp_total > 75      4grp_total > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 665
1 2 3 4 range
A 946.1
(0)
P 		623.4
(-3)
P 		636
(-2.9)
P 		1261.8
(3)
P 		638
B 891.5
(-0.3)
P 		712.1
(-1.9)
P 		597.1
(-3)
P 		1247.8
(3)
P 		651
C 668.3
(-2.6)
P 		747.9
(-1.7)
P 		629.4
(-3)
P 		1180.5
(3)
P 		551
avr 835.3
(-0.9) 		694.5
(-2.3) 		620.8
(-3) 		1230
(3) 		609

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 506
1 2 3 4 5 6 range
A 848.7
(-1.3)
P 		708.7
(-3)
P 		929.3
(-0.4)
P 		1128.4
(2)
P 		970.5
(0.1)
P 		1214.9
(3)
P 		506
B 814.9
(-3)
P 		848
(-2.4)
P 		1130.9
(3)
P 		1015.4
(0.8)
P 		1060.9
(1.7)
P 		1113.9
(2.7)
P 		316
C 826.5
(-2.7)
P 		807.8
(-3)
P 		1021.2
(0.4)
P 		1150.7
(2.5)
P 		1001.9
(0.1)
P 		1184
(3)
P 		376
avr 830
(-2.3) 		788.2
(-3) 		1027.1
(0.7) 		1098.2
(1.9) 		1011.1
(0.5) 		1170.9
(3) 		383
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 344.5
(3)
P 		135.3
(-3)
P 		166.3
(-2.1)
P 		184.7
(-1.6)
P 		209
B 284.3
(3)
P 		175.9
(-1.5)
P 		138.4
(-3)
P 		265.9
(2.2)
P 		146
C 221.2
(3)
P 		215
(1.3)
P 		219.4
(2.5)
P 		199
(-3)
P 		22
avr 283.3
(3) 		175.4
(-3) 		174.7
(-3) 		216.5
(-0.7) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 156.5
(-3)
P 		252
(1.1)
P 		202.4
(-1)
P 		286.2
(2.6)
P 		292.8
(2.9)
P 		295.8
(3)
P 		139
B 283.5
(-2.5)
P 		282.3
(-2.5)
P 		274.6
(-2.8)
P 		269
(-3)
P 		431
(3)
P 		415.4
(2.4)
P 		162
C 306.4
(-0.3)
P 		246.5
(-2.5)
P 		259.9
(-2)
P 		231.4
(-3)
P 		324.2
(0.4)
P 		396.3
(3)
P 		165
avr 248.8
(-2.8) 		260.3
(-2.3) 		245.6
(-3) 		262.2
(-2.2) 		349.3
(2) 		369.2
(3) 		124
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 190012_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8009
Sequence Type Exemplar sequence
Representative Public ID C05D2.6 NCBI
Target Description C05D2.6 /REP_DB=WormBase Gene ID /WP=CE26864 /TR=O45133 /GB=AAK67208.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation /DEF=human LIS-1 protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065804(11), NM_065803(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065804 NCBI Caenorhabditis elegans C05D2.10a (C05D2.10) mRNA, complete cds. 11/11 None
NM_065803 NCBI Caenorhabditis elegans C05D2.10b (C05D2.10) mRNA, complete cds. 11/11 None
SNAP00000007733 ENSEMBL cdna:SNAP chromosome:CEL140:III:5598069:5603382:-1 11/11 None
GENEFINDER00000007745 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5598069:5600363:-1 11/11 None
C05D2.10a.1 ENSEMBL cdna:known chromosome:CEL140:III:5597916:5600010:-1 gene:C05D2.10 11/11 None
C05D2.10a.2 ENSEMBL cdna:known chromosome:CEL140:III:5597942:5600012:-1 gene:C05D2.10 11/11 None
C05D2.10b ENSEMBL cdna:known chromosome:CEL140:III:5598069:5600010:-1 gene:C05D2.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5598067-5603381(-) 100.0 100.0
Public Domain and Genome References
Ensembl C05D2.10
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK67207 Hypothetical protein C05D2.10a [Caenorhabditis elegans] ref|NP_498205.1| C05D2.10a [Caenorhabditis elegans] 0.0
blast T32986 hypothetical protein C05D2.6 - Caenorhabditis elegans 0.0
blast AAL13318 Hypothetical protein C05D2.10b [Caenorhabditis elegans] ref|NP_498204.1| C05D2.10b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.2E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 7.7E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.9E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0049
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.2E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 7.7E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.9E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0049
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.2E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 7.7E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.9E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0049
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 3.2E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 7.7E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-10
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.1E-8
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 1.9E-11
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.0049
Sequence
Target Sequence 
>C. ELEGANS:190012_S_AT
ggacatcgagctcctgttagctgttgtgaatggcttgctggaggacagcagatggtcact
gcttcctgggatcgaacggcaaatgtttgggatgttgagaaaggagaagttgtgaatatt
ttaagtggtcatgaaagtgagcttaatcactgtagcactcactccaatcaaaagctcgtg
ctcacctcatccaaagactccaccttccgcctctgggatttccgagaagccatacagtcg
gtcgcagtgttccagggacaccaggattcagtgacttcggtcagctttaacacggactat
cgaatcgtgtcgtccagtgacgatgctactgtaaaaatctgggatcttcgaaacatgcga
accccgctggccacgattcggctctcatcaccggcgaatcgtgtggcgatcagcaagtca
catccggtcatcgccatcccaatggataatcgtcacgtcaggatctatgatctcaatgga
aatcgcctgccacgtatgccgaaccgccgatgtcacgaacgaatggtgacgtgctgtgca
tggctcgacgagcatcctgccaacaatctgctcaccgctggtttcgatagaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACATCGAGCTCCTGTTAGCTGTT 620 525 2410 Antisense
GCTTAATCACTGTAGCACTCACTCC 424 305 2550 Antisense
GCACTCACTCCAATCAAAAGCTCGT 154 317 2564 Antisense
CGCCTCTGGGATTTCCGAGAAGCCA 621 257 2617 Antisense
CGAGAAGCCATACAGTCGGTCGCAG 321 251 2632 Antisense
TGACTTCGGTCAGCTTTAACACGGA 32 567 2681 Antisense
GACTATCGAATCGTGTCGTCCAGTG 349 373 2704 Antisense
TCATCACCGGCGAATCGTGTGGCGA 232 621 2794 Antisense
CAATGGAAATCGCCTGCCACGTATG 349 183 2883 Antisense
AATGGTGACGTGCTGTGCATGGCTC 535 163 2931 Antisense
TGCTCACCGCTGGTTTCGATAGAAT 2 581 2978 Antisense
Sequence Source Affymetrix Proprietary Database