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[190010_at]

Description R07E5.12 /REP_DB=WormBase Gene ID /WP=CE03534 /TR=Q21833 /GB=CAA83627.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=RNA binding protein
Cluster 6grp_highest_10_10 > 11      6grp_high1_10_10 > 01      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 76      6grp_total > 08      4grp_total > 60      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 548
1 2 3 4 range
A 1424
(2.4)
P 		1110.6
(-1.2)
P 		1479.5
(3)
P 		958
(-3)
P 		522
B 1304.2
(0.4)
P 		1252.6
(-0.2)
P 		1506.4
(3)
P 		1033.5
(-3)
P 		473
C 1364.4
(2.4)
P 		1404.4
(3)
P 		1406.3
(3)
P 		1002.8
(-3)
P 		404
avr 1364.2
(1.7) 		1255.9
(0.3) 		1464.1
(3) 		998.1
(-3) 		466

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 843
1 2 3 4 5 6 range
A 1625.5
(3)
P 		1262.4
(-0.1)
P 		1366.2
(0.8)
P 		1199.6
(-0.6)
P 		914.1
(-3)
P 		939
(-2.8)
P 		711
B 1286
(3)
P 		1000.9
(-0.6)
P 		815.6
(-3)
P 		1110.5
(0.8)
P 		1195.4
(1.8)
P 		914.9
(-1.7)
P 		470
C 1313.1
(3)
P 		1144
(1.1)
P 		1238.2
(2.2)
P 		1260.3
(2.4)
P 		851.4
(-2.2)
P 		782.8
(-3)
P 		530
avr 1408.2
(3) 		1135.8
(-0.1) 		1140
(-0) 		1190.1
(0.5) 		987
(-1.8) 		878.9
(-3) 		529
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 378
1 2 3 4 range
A 518.5
(3)
P 		241.1
(-1.4)
P 		386.8
(0.9)
P 		140.2
(-3)
P 		378
B 415.9
(3)
P 		309.4
(-0.3)
P 		349.1
(1)
P 		220.2
(-3)
P 		196
C 451.7
(2.3)
P 		403.8
(1.4)
P 		490.2
(3)
P 		169.1
(-3)
P 		321
avr 462
(3) 		318.1
(-0) 		408.7
(1.9) 		176.5
(-3) 		286

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 289
1 2 3 4 5 6 range
A 299.6
(-1.1)
P 		449
(3)
P 		297.5
(-1.1)
P 		304.3
(-0.9)
P 		275.8
(-1.7)
P 		228.6
(-3)
P 		220
B 447.5
(2.2)
P 		333.2
(-0.2)
P 		198.1
(-3)
P 		294.1
(-1)
P 		485.7
(3)
P 		341.2
(-0)
P 		288
C 486.7
(3)
P 		349.1
(-0.5)
P 		315.1
(-1.4)
P 		253.4
(-3)
P 		275.5
(-2.4)
P 		262
(-2.8)
P 		233
avr 411.3
(3) 		377.1
(1.5) 		270.2
(-3) 		283.9
(-2.4) 		345.7
(0.2) 		277.3
(-2.7) 		141
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190010_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7699
Sequence Type Exemplar sequence
Representative Public ID R07E5.12 NCBI
Target Description R07E5.12 /REP_DB=WormBase Gene ID /WP=CE03534 /TR=Q21833 /GB=CAA83627.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=RNA binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065496(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065496 NCBI Caenorhabditis elegans R07E5.12 (R07E5.12) mRNA, complete cds. 11/11 None
SNAP00000012853 ENSEMBL cdna:SNAP chromosome:CEL140:III:4414809:4418021:-1 11/11 None
GENEFINDER00000012869 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4415567:4418021:-1 9/11 None
R07E5.12.1 ENSEMBL cdna:known chromosome:CEL140:III:4416709:4418026:-1 gene:R07E5.12 11/11 None
R07E5.12.2 ENSEMBL cdna:known chromosome:CEL140:III:4416709:4418033:-1 gene:R07E5.12 11/11 None
R07E5.12.3 ENSEMBL cdna:known chromosome:CEL140:III:4417429:4418025:-1 gene:R07E5.12 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_065495 4/11 Cross Hyb Matching Probes None
R07E5.10 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4417638-4418021(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R07E5.12
Entrez Gene 3565423 Entrez gene
SwissProt Q21833 EMBL-EBI
WormBase CE03534 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA83630 Hypothetical protein R07E5.10 [Caenorhabditis elegans] ref|NP_497896.1| R07E5.10 [Caenorhabditis elegans] 0.0
blast S43603 RNA binding protein homolog R07E5.12 - Caenorhabditis elegans 2.0E-65
blast S43603 RNA binding protein homolog R07E5.12 - Caenorhabditis elegans 3.0E-52
blast EAA11866 ENSANGP00000007243 [Anopheles gambiae str. PEST] ref|XP_315591.2| ENSANGP00000007243 [Anopheles gambiae str. PEST] 3.0E-51
blast EAA11866 ENSANGP00000007243 [Anopheles gambiae str. PEST] ref|XP_315591.2| ENSANGP00000007243 [Anopheles gambiae str. PEST] 2.0E-49
blast CAA83627 Hypothetical protein R07E5.12 [Caenorhabditis elegans] ref|NP_497897.1| R07E5.12 [Caenorhabditis elegans] 1.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR002893 EMBL-EBI Zn-finger, MYND type 1.7E-20
Pfam IPR007320 EMBL-EBI Programmed cell death protein 2, C-terminal 1.5E-26
Pfam IPR002893 EMBL-EBI Zn-finger, MYND type 1.7E-20
Pfam IPR007320 EMBL-EBI Programmed cell death protein 2, C-terminal 4.6E-29
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497897.1 2 31-53,66-88
R07E5.12.1 2 31-53,66-88
R07E5.12.2 2 31-53,66-88
R07E5.12.3 2 31-53,66-88
SNAP00000012853 2 31-53,66-88
GENEFINDER00000012869 1 30-49
Sequence
Target Sequence 
>C. ELEGANS:190010_AT
tcaacaatggcaactctgttcccgaactttcgtgatcaggaagtccaatccgctgtcaag
aaccttctcacgtatagtcttgtgattctcatcgttcctcttgcttctatgttcctcttg
aaacaattctttttcgaagggctcctgggtgtcagtgcaaacgacgctttgacctattct
gcgatcattgctgtcgtcctcgtccacgtggttttgggtatctggctcttcgctgctacc
aaacaagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACAATGGCAACTCTGTTCCCGA 11 631 40 Antisense
CTGTTCCCGAACTTTCGTGATCAGG 366 237 55 Antisense
GATCAGGAAGTCCAATCCGCTGTCA 656 419 73 Antisense
AGAACCTTCTCACGTATAGTCTTGT 171 73 98 Antisense
TAGTCTTGTGATTCTCATCGTTCCT 495 653 114 Antisense
CTTGCTTCTATGTTCCTCTTGAAAC 352 219 139 Antisense
TTTCGAAGGGCTCCTGGGTGTCAGT 51 669 171 Antisense
AACGACGCTTTGACCTATTCTGCGA 671 143 199 Antisense
TATTCTGCGATCATTGCTGTCGTCC 150 665 214 Antisense
TCCTCGTCCACGTGGTTTTGGGTAT 236 385 236 Antisense
GCTCTTCGCTGCTACCAAACAAGAA 102 301 264 Antisense
Sequence Source Affymetrix Proprietary Database