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[190009_at] ERG-3 like protein

Description F49E12.10 /REP_DB=WormBase Gene ID /WP=CE03386 /TR=Q20612 /GB=CAA91384.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ERG-3 like protein
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_highest_8_8 > 22      4grp_high_8_8 > 06      6grp_highest_nonorm > 40      6grp_total > 25      4grp_total > 02      6grp_highest_sub > 01_02      6grp_high1_sub > 01_02      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 436
1 2 3 4 range
A 128.1
(-3)
P 		126.3
(-3)
P 		169.3
(-2.2)
P 		449.6
(3)
P 		323
B 96.6
(-3)
P 		136.8
(-2.4)
P 		129.2
(-2.5)
P 		518.3
(3)
P 		422
C 142.2
(-3)
P 		140.5
(-3)
P 		145.1
(-2.9)
P 		532.3
(3)
P 		392
avr 122.3
(-3) 		134.5
(-2.8) 		147.9
(-2.6) 		500.1
(3) 		378

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 984
1 2 3 4 5 6 range
A 1015.3
(3)
P 		901.4
(2.2)
P 		521.9
(-0.5)
P 		177.9
(-3)
P 		315.4
(-2)
P 		320
(-2)
P 		837
B 977.9
(1.9)
P 		1162.1
(3)
P 		562.7
(-0.7)
P 		200.9
(-3)
P 		362.6
(-2)
P 		378.1
(-1.9)
P 		961
C 716.6
(0.1)
P 		1152.1
(3)
P 		341.8
(-2.5)
P 		261.5
(-3)
P 		283.8
(-2.8)
P 		402.4
(-2.1)
P 		891
avr 903.3
(1.8) 		1071.9
(3) 		475.5
(-1.2) 		213.4
(-3) 		320.6
(-2.3) 		366.8
(-1.9) 		859
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 46.7
(0)
P 		27.4
(-3)
P 		44.3
(-0.4)
P 		65.8
(3)
P 		38
B 30.8
(-2.9)
P 		33.8
(-2.7)
P 		29.9
(-3)
P 		110.5
(3)
P 		81
C 47.1
(-2.2)
P 		40.4
(-3)
P 		50.6
(-1.8)
P 		89.8
(3)
P 		49
avr 41.5
(-2.2) 		33.9
(-3) 		41.6
(-2.2) 		88.7
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 342
1 2 3 4 5 6 range
A 187.2
(0.1)
P 		320.6
(3)
P 		113.7
(-1.5)
P 		45.1
(-3)
P 		95.2
(-1.9)
P 		77.9
(-2.3)
P 		276
B 340.3
(2.2)
P 		386.8
(3)
P 		136.6
(-1.5)
P 		53.2
(-3)
P 		147.3
(-1.3)
P 		141
(-1.4)
P 		334
C 265.6
(1.3)
P 		351.5
(3)
P 		87
(-2.3)
P 		52.6
(-3)
P 		91.8
(-2.2)
P 		134.7
(-1.4)
P 		299
avr 264.4
(1.2) 		353
(3) 		112.4
(-1.8) 		50.3
(-3) 		111.4
(-1.8) 		117.9
(-1.7) 		303
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190009_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3573
Sequence Type Exemplar sequence
Representative Public ID F49E12.10 NCBI
Target Description F49E12.10 /REP_DB=WormBase Gene ID /WP=CE03386 /TR=Q20612 /GB=CAA91384.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=ERG-3 like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063363(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063363 NCBI Caenorhabditis elegans F49E12.10 (F49E12.10) mRNA, complete cds. 11/11 None
SNAP00000029997 ENSEMBL cdna:SNAP chromosome:CEL140:II:8391010:8392138:1 11/11 None
GENEFINDER00000030008 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8391010:8392138:1 11/11 None
F49E12.10 ENSEMBL cdna:known chromosome:CEL140:II:8391010:8392138:1 gene:F49E12.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8391006-8392135(+) 100.0 100.0
Public Domain and Genome References
Gene Title ERG-3 like protein
Ensembl F49E12.10
Entrez Gene 186061 Entrez gene
SwissProt Q20612 EMBL-EBI
WormBase CE03386 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.26973.1.S1_AT similar to CG1998-PA cfa
DROSOPHILA_2:1632313_AT dm
DROSGENOME1:145008_AT dm
CHICKEN:GGAAFFX.2469.1.S1_AT similar to hypothetical protein gga
HG-U133_PLUS_2:220751_S_AT chromosome 5 open reading frame 4 hs
HG-U133A:220751_S_AT chromosome 5 open reading frame 4 hs
HG-U133A_2:220751_S_AT chromosome 5 open reading frame 4 hs
HU35KSUBA:RC_AA065173_AT chromosome 5 open reading frame 4 hs
HU35KSUBA:RC_AA406354_AT chromosome 5 open reading frame 4 hs
U133_X3P:G7705942_3P_A_AT chromosome 5 open reading frame 4 hs
U133_X3P:4861120_3P_S_AT chromosome 5 open reading frame 4 hs
HG-U133A_2:48030_I_AT chromosome 5 open reading frame 4 hs
HG-FOCUS:48030_I_AT chromosome 5 open reading frame 4 hs
HG-U133_PLUS_2:48030_I_AT chromosome 5 open reading frame 4 hs
HG-U133A:48030_I_AT chromosome 5 open reading frame 4 hs
HG-U95B:48030_I_AT chromosome 5 open reading frame 4 hs
HG-U133A_2:48031_R_AT chromosome 5 open reading frame 4 hs
HG-FOCUS:48031_R_AT chromosome 5 open reading frame 4 hs
HG-U133_PLUS_2:48031_R_AT chromosome 5 open reading frame 4 hs
HG-U133A:48031_R_AT chromosome 5 open reading frame 4 hs
HG-U95B:48031_R_AT chromosome 5 open reading frame 4 hs
HG-U95B:51618_AT chromosome 5 open reading frame 4 hs
HG-U95E:71825_AT chromosome 5 open reading frame 4 hs
U133_X3P:1564699_3P_AT Chromosome 5 open reading frame 4 hs
HG-U133_PLUS_2:1564699_AT Chromosome 5 open reading frame 4 hs
HG-U95D:73070_AT Chromosome 5 open reading frame 4 hs
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91384 Hypothetical protein F49E12.10 [Caenorhabditis elegans] ref|NP_495764.1| F49E12.10 [Caenorhabditis elegans] 1.0E-168
blast CAE57653 Hypothetical protein CBG00643 [Caenorhabditis briggsae] 1.0E-144
blast CAA91383 Hypothetical protein F49E12.9 [Caenorhabditis elegans] ref|NP_495763.1| F49E12.9 [Caenorhabditis elegans] 1.0E-97
Protein Domains
Database ID Description E-Value
Pfam IPR006088 EMBL-EBI Sterol desaturase 3.6E-85
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495764.1 2 21-43,70-92
F49E12.10 2 21-43,70-92
SNAP00000029997 2 21-43,70-92
GENEFINDER00000030008 2 21-43,70-92
Sequence
Target Sequence 
>C. ELEGANS:190009_AT
ggacccgtgattccatcatggtatatactattgagagatgcttgtctttgtatggctatg
gatgaaattggattttattatactcatagactgtttcaccatccaaaactatacaaacat
atacacaagaagcatcatgaatggaacgcaccagtttcgatttccagcatttatgctcat
ccacttgaacacgcaatttctaatttgagtccaatttatcttggagcagtactcttccgt
tgtcatgttgtgagccattacatatttacatcatatgcaattcttacaacaacatttcat
cattctggatatcattttccattcatgctttctgctgagcatcatgacttccatcataaa
gtattcaatgagtgttatggttttgggccacttgactggctccacggaacagataaaacc
ttcagaaaatctattgaacacccacgtgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACCCGTGATTCCATCATGGTATA 242 523 313 Antisense
GATGCTTGTCTTTGTATGGCTATGG 242 413 349 Antisense
ACTCATAGACTGTTTCACCATCCAA 259 99 394 Antisense
GCACCAGTTTCGATTTCCAGCATTT 480 311 460 Antisense
TATGCTCATCCACTTGAACACGCAA 610 657 484 Antisense
ATCTTGGAGCAGTACTCTTCCGTTG 273 31 530 Antisense
TCTTCCGTTGTCATGTTGTGAGCCA 280 617 545 Antisense
ATCATTTTCCATTCATGCTTTCTGC 137 31 623 Antisense
TCTGCTGAGCATCATGACTTCCATC 429 609 643 Antisense
ACTTGACTGGCTCCACGGAACAGAT 165 103 702 Antisense
AAAATCTATTGAACACCCACGTGAC 626 133 738 Antisense
Sequence Source Affymetrix Proprietary Database