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[190008_at]

Description B0024.2_rc /REP_DB=WormBase Gene ID /WP=CE05147 /TR=Q17418 /GB=CAA94875.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /REVCOMP /DEF=collagen
Cluster 6grp_total > 77      4grp_total > 15      6grp_cgc > 48      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 36.7
(3)
A 		4.9
(-3)
A 		9.3
(-2.2)
A 		31.3
(2)
A 		32
B 23.2
(3)
A 		7.4
(-3)
A 		9.8
(-2.1)
A 		8.1
(-2.7)
A 		16
C 10.3
(-2.9)
A 		12.9
(-2.1)
A 		10.1
(-3)
A 		29.8
(3)
A 		20
avr 23.4
(3) 		8.4
(-3) 		9.7
(-2.5) 		23.1
(2.9) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 7.2
(-1.9)
A 		3.5
(-3)
A 		7
(-2)
A 		3.4
(-3)
A 		10.2
(-1.1)
A 		24.5
(3)
A 		21
B 7.7
(-2.8)
A 		8.1
(-2.7)
A 		6.7
(-3)
A 		8.5
(-2.6)
A 		10.1
(-2.3)
A 		35.4
(3)
A 		29
C 4.1
(-2.6)
A 		6.4
(-1)
A 		3.6
(-3)
A 		12.1
(3)
A 		7.8
(-0)
A 		10.5
(1.9)
A 		9
avr 6.3
(-2.8) 		6
(-2.9) 		5.8
(-3) 		8
(-2.3) 		9.4
(-1.8) 		23.5
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 13.4
(3)
A 		1.1
(-3)
A 		2.4
(-2.4)
A 		4.6
(-1.3)
A 		12
B 7.4
(3)
A 		1.8
(-2.9)
A 		2.3
(-2.4)
A 		1.7
(-3)
A 		6
C 3.4
(-3)
A 		3.7
(-1.9)
A 		3.5
(-2.6)
A 		5
(3)
A 		2
avr 8.1
(3) 		2.2
(-3) 		2.7
(-2.5) 		3.8
(-1.4) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.3
(-2.4)
A 		1.2
(-2.5)
A 		1.5
(-2.2)
A 		0.8
(-3)
A 		3.1
(-0.3)
A 		6
(3)
A 		5
B 2.7
(-2.4)
A 		2.7
(-2.4)
A 		1.6
(-3)
A 		2.3
(-2.6)
A 		4.1
(-1.7)
A 		13.2
(3)
A 		12
C 1.5
(-1.6)
A 		1.9
(-0.7)
A 		0.9
(-3)
A 		2.4
(0.5)
A 		2.5
(0.7)
A 		3.5
(3)
A 		3
avr 1.8
(-2.5) 		1.9
(-2.4) 		1.3
(-3) 		1.8
(-2.5) 		3.2
(-1.2) 		7.6
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190008_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28151
Sequence Type Exemplar sequence
Representative Public ID B0024.2 NCBI
Target Description B0024.2_rc /REP_DB=WormBase Gene ID /WP=CE05147 /TR=Q17418 /GB=CAA94875.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /REVCOMP /DEF=collagen
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) B0024.2
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
B0024.2 B0024.2_rc /REP_DB=WormBase Gene ID /WP=CE05147 /TR=Q17418 /GB=CAA94875.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /REVCOMP /DEF=collagen A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073246 11/11 Negative Strand Matching Probes A 
SNAP00000027128 11/11 Negative Strand Matching Probes None
GENEFINDER00000027145 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10296214-10297187(+) 100.0 100.0
Public Domain and Genome References
Ensembl B0024.2
Sequence
Target Sequence 
>C. ELEGANS:190008_AT
ctcttccaggatgtccagcatttccttgtggtgccggttgacctggtctaccattatttc
cttttcttccaggttgtcctggacgtccatctggacctggtcttcctgcttgtccaattg
aacctgttgggcctgctggtcctcgtgggcatttaacacatcctggttgttgtcgtggac
attgaattggagcatgcacctgatgattgtcctgtccacggggtcctggtgatccagaag
ttccacgttgtcctggacgacctggaggtcctggtggtccccgtggacaacgtggcttcg
ccggctcacattgacaccaagatggtaatcccgaaaatgtttgacgcttttgacggaaga
cagagttaaatggattttccttaggctttgatggtggagataccattacttgaacatcga
gcatctcaacccaggcagcatccgtttctgcgcggaaaatcttcacaccatccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTTCCAGGATGTCCAGCATTTCC 108 229 312 Antisense
TGCCGGTTGACCTGGTCTACCATTA 69 585 343 Antisense
TGGTCTACCATTATTTCCTTTTCTT 509 551 355 Antisense
CTTCCTGCTTGTCCAATTGAACCTG 362 219 413 Antisense
GGTCCTCGTGGGCATTTAACACATC 634 497 449 Antisense
AACACATCCTGGTTGTTGTCGTGGA 308 135 466 Antisense
GCATGCACCTGATGATTGTCCTGTC 573 309 503 Antisense
TCCACGGGGTCCTGGTGATCCAGAA 708 525 526 Antisense
TGATCCAGAAGTTCCACGTTGTCCT 610 563 541 Antisense
CCACGTTGTCCTGGACGACCTGGAG 327 273 554 Antisense
GCGGAAAATCTTCACACCATCCAAA 638 291 763 Antisense
Sequence Source Affymetrix Proprietary Database