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[190006_at]

Description R02E12.2 /REP_DB=WormBase Gene ID /WP=CE28410 /TR=Q21643 /GB=AAA96186.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=mouse MO25 protein
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 82      6grp_total > 46      4grp_total > 03      6grp_highest_sub > Cu      6grp_high1_sub > Cu      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 410
1 2 3 4 range
A 442.6
(-0.2)
P 		357.3
(-2.2)
P 		322.4
(-3)
P 		581.6
(3)
P 		259
B 459.9
(-1.6)
P 		373.2
(-3)
P 		402.6
(-2.5)
P 		732.6
(3)
P 		359
C 390.5
(-3)
P 		467.2
(-0.8)
P 		490.2
(-0.2)
P 		602
(3)
P 		212
avr 431
(-2.2) 		399.2
(-3) 		405.1
(-2.9) 		638.7
(3) 		240

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 326
1 2 3 4 5 6 range
A 391.1
(2.4)
P 		255.4
(-1.6)
P 		410.7
(3)
P 		209.7
(-3)
P 		316.5
(0.2)
P 		285.5
(-0.7)
P 		201
B 451.5
(1.9)
P 		488.4
(3)
P 		391.1
(-0)
P 		295.3
(-3)
P 		414.4
(0.7)
P 		435.2
(1.3)
P 		193
C 298.8
(-2.3)
P 		535.7
(3)
P 		268.9
(-3)
P 		293.7
(-2.4)
P 		335.8
(-1.5)
P 		455.5
(1.2)
P 		267
avr 380.5
(1.3) 		426.5
(3) 		356.9
(0.4) 		266.2
(-3) 		355.6
(0.3) 		392.1
(1.7) 		160
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 93
1 2 3 4 range
A 161.2
(3)
P 		77.6
(-3)
P 		84.3
(-2.5)
P 		85.1
(-2.5)
P 		84
B 146.7
(2.1)
P 		92.2
(-3)
P 		93.3
(-2.9)
P 		156.1
(3)
P 		64
C 129.3
(-0.6)
P 		134.3
(-0.2)
P 		170.8
(3)
P 		101.5
(-3)
P 		69
avr 145.7
(3) 		101.4
(-3) 		116.1
(-1) 		114.2
(-1.3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 72.1
(-0.3)
P 		90.8
(2.3)
P 		89.4
(2.1)
P 		53.2
(-3)
P 		95.5
(3)
P 		69.5
(-0.7)
P 		42
B 157.1
(2.2)
P 		162.6
(2.6)
P 		95
(-1.9)
P 		78.2
(-3)
P 		168.4
(3)
P 		162.3
(2.6)
P 		90
C 110.7
(-0)
P 		163.5
(3)
P 		68.4
(-2.5)
P 		59.1
(-3)
P 		108.7
(-0.1)
P 		152.5
(2.4)
P 		104
avr 113.3
(1) 		139
(3) 		84.3
(-1.3) 		63.5
(-3) 		124.2
(1.8) 		128.1
(2.1) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190006_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18295
Sequence Type Exemplar sequence
Representative Public ID R02E12.2 NCBI
Target Description R02E12.2 /REP_DB=WormBase Gene ID /WP=CE28410 /TR=Q21643 /GB=AAA96186.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=mouse MO25 protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029648(11), NM_001029649(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029648 NCBI Caenorhabditis elegans R02E12.2a (R02E12.2) mRNA, complete cds. 11/11 None
NM_001029649 NCBI Caenorhabditis elegans R02E12.2b (R02E12.2) mRNA, complete cds. 11/11 None
GENEFINDER00000023249 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4019118:4021436:1 11/11 None
R02E12.2a ENSEMBL cdna:known chromosome:CEL140:X:4012207:4022185:1 gene:R02E12.2 11/11 A 
R02E12.2b.2 ENSEMBL cdna:known chromosome:CEL140:X:4019221:4022185:1 gene:R02E12.2 11/11 None
R02E12.2b.1 ENSEMBL cdna:known chromosome:CEL140:X:4019223:4022185:1 gene:R02E12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023243 3/11 Cross Hyb Matching Probes None
SNAP00000023244 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4019282-4021437(+) 100.0 100.0
Public Domain and Genome References
Ensembl R02E12.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96186 Hypothetical protein R02E12.2a [Caenorhabditis elegans] ref|NP_001024819.1| R02E12.2a [Caenorhabditis elegans] 0.0
blast AAP40522 Hypothetical protein R02E12.2b [Caenorhabditis elegans] ref|NP_001024820.1| R02E12.2b [Caenorhabditis elegans] 0.0
blast CAE68514 Hypothetical protein CBG14328 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004892 EMBL-EBI Mo25 1.0E-126
Pfam IPR004892 EMBL-EBI Mo25 1.0E-126
Pfam IPR004892 EMBL-EBI Mo25 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:190006_AT
gatgtcttttacacattcttcctatatgtgcagagtgaggtgttcgatatctcatctgat
gcgttttcgacgttcaaggaactcactacaaggcacaaagcaattattgctgaattcctt
gattcgaactatgatactttctttgctcagtaccaaaacctgctcaattcgaagaactac
gtgacgcgtcgtcagtcgttgaaactgctcggcgagcttcttctcgaccgtcacaacttt
aacacaatgacaaagtacatttcgaatccggataacctgagattgatgatggaattgttg
agagataagagcagaaacattcaatatgaggcattccatgtgttcaaggtttttgttgcg
aatccaaacaaaccaaagccaatctctgacattctcaatcgcaatcgcgaaaagctggtg
gagtttctcagcgaattccacaacgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGTCTTTTACACATTCTTCCTAT 589 409 541 Antisense
GGTGTTCGATATCTCATCTGATGCG 100 501 579 Antisense
GATGCGTTTTCGACGTTCAAGGAAC 216 413 598 Antisense
GATACTTTCTTTGCTCAGTACCAAA 2 423 673 Antisense
GTACCAAAACCTGCTCAATTCGAAG 650 457 690 Antisense
GTGACGCGTCGTCAGTCGTTGAAAC 392 481 721 Antisense
TCTCGACCGTCACAACTTTAACACA 280 597 762 Antisense
GAGGCATTCCATGTGTTCAAGGTTT 593 403 868 Antisense
CAAACCAAAGCCAATCTCTGACATT 83 193 909 Antisense
CTCTGACATTCTCAATCGCAATCGC 434 231 924 Antisense
GTTTCTCAGCGAATTCCACAACGAT 127 449 963 Antisense
Sequence Source Affymetrix Proprietary Database