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[190005_at]

Description T11F9.9_rc /REP_DB=WormBase Gene ID /WP=CE06421 /TR=Q22393 /GB=CAA98525.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /REVCOMP /DEF=collagen
Cluster 6grp_total > 01      4grp_total > 42      6grp_cgc > 53      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 26.9
(-0.6)
A 		48.4
(2.1)
A 		55.9
(3)
A 		7.6
(-3)
A 		48
B 10.8
(-2.5)
A 		80.8
(3)
A 		16.6
(-2.1)
A 		4.6
(-3)
A 		76
C 9.7
(-3)
A 		39
(3)
M 		21.2
(-0.6)
A 		34.6
(2.1)
A 		29
avr 15.8
(-3) 		56.1
(3) 		31.2
(-0.7) 		15.6
(-3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 29.3
(0.7)
A 		45
(3)
A 		42.8
(2.7)
A 		34.3
(1.5)
A 		3.2
(-3)
A 		33.4
(1.3)
A 		42
B 16.3
(-1.2)
A 		38.5
(3)
A 		6.6
(-3)
A 		25.3
(0.5)
A 		22
(-0.1)
A 		15.5
(-1.3)
A 		32
C 20.4
(-0.4)
A 		29.9
(1)
A 		3.5
(-3)
A 		25.3
(0.3)
A 		43.2
(3)
A 		6.7
(-2.5)
A 		40
avr 22
(-1.7) 		37.8
(3) 		17.6
(-3) 		28.3
(0.2) 		22.8
(-1.5) 		18.5
(-2.7) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 9.8
(0.9)
A 		10.5
(1.2)
A 		14.6
(3)
A 		1.1
(-3)
A 		14
B 3.4
(-2.2)
A 		20
(3)
A 		3.9
(-2.1)
A 		1
(-3)
A 		19
C 3.2
(-3)
A 		11.2
(3)
M 		7.4
(0.2)
A 		5.8
(-1.1)
A 		8
avr 5.5
(-1.5) 		13.9
(3) 		8.6
(0.2) 		2.6
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 5.4
(-1.2)
A 		16
(3)
A 		9.3
(0.3)
A 		8.7
(0.1)
A 		1
(-3)
A 		8.1
(-0.2)
A 		15
B 5.7
(-0.8)
A 		12.8
(3)
A 		1.6
(-3)
A 		6.7
(-0.3)
A 		8.9
(0.9)
A 		5.8
(-0.8)
A 		11
C 7.5
(0)
A 		9.1
(0.8)
A 		0.9
(-3)
A 		5.1
(-1.1)
A 		14
(3)
A 		2.2
(-2.4)
A 		13
avr 6.2
(-1.4) 		12.6
(3) 		3.9
(-3) 		6.8
(-1) 		8
(-0.2) 		5.4
(-2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 190005_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28157
Sequence Type Exemplar sequence
Representative Public ID T11F9.9 NCBI
Target Description T11F9.9_rc /REP_DB=WormBase Gene ID /WP=CE06421 /TR=Q22393 /GB=CAA98525.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /REVCOMP /DEF=collagen
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) T11F9.9
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T11F9.9 T11F9.9_rc /REP_DB=WormBase Gene ID /WP=CE06421 /TR=Q22393 /GB=CAA98525.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /REVCOMP /DEF=collagen A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073512 11/11 Negative Strand Matching Probes A 
SNAP00000013927 11/11 Negative Strand Matching Probes None
GENEFINDER00000013944 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11391477-11392444(+) 92.22 96.33
chrV:11486641-11487586(-) 95.0 100.0
chrV:11387964-11388931(-) 97.0 97.0
Public Domain and Genome References
Ensembl T11F9.9
Sequence
Target Sequence 
>C. ELEGANS:190005_AT
gctcctgggtttccattttgtccagatggacccttgtttcctggtgctcctggttgtcca
tcttgtcctggggatcctgggtttccgttgcttccagcatctcctgatggtcctggtggt
cctggtggtcctggtggtccttgtgggcatggttggcatggtggtggagtgattgggtca
catggttgctgtggtgggcgtcccgggtttcctggaagtcctggtgctcctggctttcct
ggacgtcctggctttcctggtgttccagctggtccagcagctcctggcaagcagcaagca
tcacatcctccagcggaagcagatcctccattgactccagcatcgtatccagcttgacgg
gcggttctgttggcgtgttggatgctcttgagttggttgacctcagaccagatatcttta
gcggatccacggcagaattgaacctcttgattcatggttctcttgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCCTGGGTTTCCATTTTGTCCAG 492 297 323 Antisense
TCCAGATGGACCCTTGTTTCCTGGT 654 589 343 Antisense
TCCAGCATCTCCTGATGGTCCTGGT 619 589 415 Antisense
TGGTCCTTGTGGGCATGGTTGGCAT 317 549 457 Antisense
GGGTCACATGGTTGCTGTGGTGGGC 586 497 497 Antisense
TCCAGCAGCTCCTGGCAAGCAGCAA 608 589 595 Antisense
AGCGGAAGCAGATCCTCCATTGACT 544 81 634 Antisense
GGTTCTGTTGGCGTGTTGGATGCTC 552 507 685 Antisense
CAGATATCTTTAGCGGATCCACGGC 240 205 731 Antisense
GATCCACGGCAGAATTGAACCTCTT 602 415 746 Antisense
CCTCTTGATTCATGGTTCTCTTGAC 124 269 765 Antisense
Sequence Source Affymetrix Proprietary Database