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[189998_at] Lectin C-type domain

Description K04H8.1 /REP_DB=WormBase Gene ID /WP=CE11756 /TR=O01336 /GB=CAB04563.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster 6grp_total > 64      4grp_total > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 13.7
(-1.4)
A 		40.1
(3)
A 		15.1
(-1.1)
A 		3.8
(-3)
A 		36
B 22.4
(3)
A 		6.2
(-2.2)
A 		7.6
(-1.8)
A 		3.8
(-3)
A 		19
C 17.8
(3)
A 		8.4
(-2.2)
A 		17.8
(3)
A 		7
(-3)
A 		11
avr 18
(2.9) 		18.2
(3) 		13.5
(0.9) 		4.9
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 9.7
(-0.4)
A 		1.8
(-3)
A 		2.5
(-2.8)
A 		2.4
(-2.8)
A 		4.8
(-2)
A 		20
(3)
A 		18
B 15.8
(1.3)
A 		2.1
(-2.9)
A 		21.5
(3)
A 		13.2
(0.5)
A 		1.8
(-3)
A 		14.3
(0.8)
A 		20
C 1.6
(-3)
A 		4.2
(-2.4)
A 		26.9
(3)
A 		24.6
(2.5)
A 		2.1
(-2.9)
A 		3.2
(-2.6)
A 		25
avr 9
(-0.4) 		2.7
(-3) 		17
(3) 		13.4
(1.5) 		2.9
(-2.9) 		12.5
(1.1) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 5
(0.3)
A 		8.7
(3)
A 		3.9
(-0.6)
A 		0.6
(-3)
A 		8
B 7.1
(3)
A 		1.5
(-2.3)
A 		1.8
(-2)
A 		0.8
(-3)
A 		6
C 5.9
(2.6)
A 		2.4
(-1.6)
A 		6.2
(3)
A 		1.2
(-3)
A 		5
avr 6
(3) 		4.2
(0.9) 		4
(0.6) 		0.9
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 1.8
(-1.2)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		0.6
(-2.9)
A 		1.4
(-1.8)
A 		4.9
(3)
A 		4
B 5.5
(3)
A 		0.7
(-3)
A 		5.2
(2.6)
A 		3.5
(0.5)
A 		0.7
(-3)
A 		5.3
(2.8)
A 		5
C 0.6
(-3)
A 		1.3
(-2.3)
A 		6.8
(3)
A 		5
(1.3)
A 		0.7
(-2.9)
A 		1.1
(-2.5)
A 		6
avr 2.6
(0.1) 		0.9
(-3) 		4.2
(3) 		3
(0.8) 		0.9
(-3) 		3.8
(2.3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189998_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.998
Sequence Type Exemplar sequence
Representative Public ID K04H8.1 NCBI
Target Description K04H8.1 /REP_DB=WormBase Gene ID /WP=CE11756 /TR=O01336 /GB=CAB04563.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=Lectin C-type domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061088(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061088 NCBI Caenorhabditis elegans K04H8.1 (K04H8.1) mRNA, complete cds. 11/11 None
GENEFINDER00000032444 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14259179:14263628:1 11/11 None
K04H8.1 ENSEMBL cdna:known chromosome:CEL140:I:14259380:14260480:1 gene:K04H8.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032441 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14259310-14260411(+) 100.0 100.0
Public Domain and Genome References
Gene Title Lectin C-type domain
Ensembl K04H8.1
Entrez Gene 187014 Entrez gene
SwissProt O01336 EMBL-EBI
WormBase CE11756 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04563 Hypothetical protein K04H8.1 [Caenorhabditis elegans] ref|NP_493489.1| K04H8.1 [Caenorhabditis elegans] 1.0E-157
blast CAB04563 Hypothetical protein K04H8.1 [Caenorhabditis elegans] ref|NP_493489.1| K04H8.1 [Caenorhabditis elegans] 1.0E-155
blast CAB05704 Hypothetical protein C49A1.6 [Caenorhabditis elegans] ref|NP_493487.1| C49A1.6 [Caenorhabditis elegans] 1.0E-57
blast CAB05704 Hypothetical protein C49A1.6 [Caenorhabditis elegans] ref|NP_493487.1| C49A1.6 [Caenorhabditis elegans] 2.0E-57
blast CAB04564 Hypothetical protein K04H8.2 [Caenorhabditis elegans] ref|NP_493490.1| K04H8.2 [Caenorhabditis elegans] 1.0E-43
blast CAE71785 Hypothetical protein CBG18789 [Caenorhabditis briggsae] 4.0E-40
Sequence
Target Sequence 
>C. ELEGANS:189998_AT
gaggttgaatgcctactccgagaagatggtggcagttaagggtacttggactattcagga
gctcaagtgttctgagggtttccgaatgtttcaccgacataagggatcatggtgcattaa
ggttgttacacgacccggaacatctcaagctgaaggtgccaatttttgctatacgcagca
taatggagtgctcagtagttttgatagcgaagaggagaagaattttgtactgaatgaaac
aatgaggtttgtagaaaaatatcagatacatgctgggtatcaaggcgatgcatattggat
gaatggggagcggaagaacagttgcatgcaccaataccaagaagggtcggattgcgatgg
aataaaggccttcaacataacggatcccttgatatctgaagtttttgaaaactgggccga
caaccaaccgagtggcatgcgtgacaacaagggagctggtggttgcatagtcttccgagt
tggaacaaaagaaggtagatcaaccgatgacgtcccgtgtgattgggggaattttcctct
cggaacctttcaatacctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGTTGAATGCCTACTCCGAGAAG 431 401 192 Antisense
GGGTACTTGGACTATTCAGGAGCTC 582 493 231 Antisense
TTACACGACCCGGAACATCTCAAGC 514 681 317 Antisense
GAAGGTGCCAATTTTTGCTATACGC 337 335 343 Antisense
GAACAGTTGCATGCACCAATACCAA 210 347 507 Antisense
AGGCCTTCAACATAACGGATCCCTT 10 11 557 Antisense
GACAACCAACCGAGTGGCATGCGTG 321 365 610 Antisense
GAGCTGGTGGTTGCATAGTCTTCCG 214 387 644 Antisense
AGGTAGATCAACCGATGACGTCCCG 133 57 684 Antisense
TGATTGGGGGAATTTTCCTCTCGGA 79 561 711 Antisense
CCTCTCGGAACCTTTCAATACCTGA 241 265 727 Antisense
Sequence Source Affymetrix Proprietary Database