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[189996_at] zinc finger protein

Description T27B7.3 /REP_DB=WormBase Gene ID /WP=CE14235 /TR=O16661 /GB=AAB66135.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_high1_10_10 > 70      4grp_high_8_8 > 31      6grp_total > 12      4grp_total > 24      6grp_cgc > 50      6grp_high1_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 113
1 2 3 4 range
A 80.1
(-3)
P 		92.1
(-2.3)
P 		179.5
(3)
P 		114.5
(-0.9)
P 		99
B 84.2
(-0.6)
M 		66.9
(-3)
P 		88.3
(-0.1)
P 		110.8
(3)
P 		44
C 77.6
(-3)
P 		101.7
(-1.4)
P 		114.1
(-0.6)
P 		170.3
(3)
P 		93
avr 80.6
(-3) 		86.9
(-2.3) 		127.3
(2.5) 		131.9
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 127.8
(2)
M 		86.9
(-1)
P 		120.5
(1.4)
P 		142
(3)
P 		85.3
(-1.1)
M 		59.2
(-3)
A 		83
B 128
(3)
P 		124.7
(2.7)
P 		85.3
(-1.3)
P 		112.6
(1.4)
P 		85.3
(-1.3)
P 		68.5
(-3)
P 		60
C 74.5
(-3)
P 		139.2
(3)
P 		87.2
(-1.8)
A 		113.3
(0.6)
A 		99.8
(-0.7)
P 		76
(-2.9)
P 		65
avr 110.1
(1.6) 		116.9
(2.4) 		97.7
(0.3) 		122.6
(3) 		90.1
(-0.6) 		67.9
(-3) 		55
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 29.1
(-0.5)
P 		20
(-2.4)
P 		46.9
(3)
P 		16.8
(-3)
P 		30
B 26.9
(3)
M 		16.5
(-3)
P 		20.5
(-0.7)
P 		23.6
(1.1)
P 		10
C 25.7
(-3)
P 		29.2
(-1.5)
P 		39.8
(3)
P 		28.7
(-1.7)
P 		14
avr 27.2
(-0.7) 		21.9
(-3) 		35.7
(3) 		23
(-2.5) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 23.6
(-0.4)
M 		30.9
(1.6)
P 		26.2
(0.3)
P 		36
(3)
P 		25.7
(0.1)
M 		14.4
(-3)
A 		22
B 44.5
(3)
P 		41.5
(2.2)
P 		20.7
(-3)
P 		29.8
(-0.7)
P 		34.6
(0.5)
P 		25.5
(-1.8)
P 		24
C 27.6
(-1.4)
P 		42.5
(3)
P 		22.2
(-3)
A 		22.8
(-2.8)
A 		32.3
(-0)
P 		25.4
(-2.1)
P 		20
avr 31.9
(0.7) 		38.3
(3) 		23
(-2.6) 		29.5
(-0.2) 		30.9
(0.3) 		21.8
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189996_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15044
Sequence Type Exemplar sequence
Representative Public ID T27B7.3 NCBI
Target Description T27B7.3 /REP_DB=WormBase Gene ID /WP=CE14235 /TR=O16661 /GB=AAB66135.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071229(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071229 NCBI Caenorhabditis elegans T27B7.3 (T27B7.3) mRNA, complete cds. 11/11 None
GENEFINDER00000042367 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2292002:2296718:1 11/11 None
T27B7.3 ENSEMBL cdna:known chromosome:CEL140:V:2294746:2296718:1 gene:T27B7.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042365 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2294745-2296718(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol nhr-226
Ensembl T27B7.3
Entrez Gene 188975 Entrez gene
SwissProt O16661 EMBL-EBI
WormBase CE14235 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
4879 ligand-dependent nuclear receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB66135 Hypothetical protein T27B7.3 [Caenorhabditis elegans] ref|NP_503630.1| T27B7.3 [Caenorhabditis elegans] 0.0
blast AAF02171 Nuclear hormone receptor family protein 115 [Caenorhabditis elegans] ref|NP_503629.2| Nuclear Hormone Receptor family member (nhr-115) [Caenorhabditis elegans] gb|AAO39204.1| nuclear receptor NHR-115 [Caenorhabditis elegans] sp|O16662|NH115_CAEEL Nuclear hormone receptor family member nhr-115 0.0
blast E88968 protein T27B7.4 [imported] - Caenorhabditis elegans 0.0
blast AAF02171 Nuclear hormone receptor family protein 115 [Caenorhabditis elegans] ref|NP_503629.2| Nuclear Hormone Receptor family member (nhr-115) [Caenorhabditis elegans] gb|AAO39204.1| nuclear receptor NHR-115 [Caenorhabditis elegans] sp|O16662|NH115_CAEEL Nuclear hormone receptor family member nhr-115 1.0E-146
blast AAB66134 Hypothetical protein T27B7.2 [Caenorhabditis elegans] ref|NP_503628.1| T27B7.2 [Caenorhabditis elegans] 1.0E-143
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.1E-4
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 3.6E-13
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.1E-4
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 4.7E-5
Sequence
Target Sequence 
>C. ELEGANS:189996_AT
tggatctcccattttgatgagtttcgaaaattggatcaaaatattcagatgaaacttgtc
caatccatatggcatattttgatgaaattccataagtgtagtgcaaccgtagcgtatagg
aaatccagcgatgaaaaaaccaggcaacttcagaaagttattagaaatgtttgcttggat
cgagaaaaaatgaaaatggattttagttggatgagcgattacccagcgcaccatgttttg
agatgcatgttctctcacaaatcctacgactttgaaattatcgaatccctgtcgaaagtg
gatccaactgatgtcgagctaacatatatgtttgcccaatcatgctttgaatatgctgga
aaacgatttcaaggagacattctgaaaatcactgatcactttcaacaagtcttatcaaat
gatctccatcactattatatcaccgaacagaggagagaacgatattttcagcggctgact
gatctaatgaaagttaacaatttgattcagagatccatctgggaaacgcgatctcgtcga
gaacttggccggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGATCTCCCATTTTGATGAGTTTC 130 551 559 Antisense
GTGTAGTGCAACCGTAGCGTATAGG 313 485 654 Antisense
ACCCAGCGCACCATGTTTTGAGATG 650 89 779 Antisense
GATGCATGTTCTCTCACAAATCCTA 23 413 800 Antisense
GAATCCCTGTCGAAAGTGGATCCAA 390 329 841 Antisense
GGATCCAACTGATGTCGAGCTAACA 691 511 858 Antisense
ATGTTTGCCCAATCATGCTTTGAAT 580 47 886 Antisense
TGATCTCCATCACTATTATATCACC 632 565 978 Antisense
GAGAACGATATTTTCAGCGGCTGAC 136 393 1013 Antisense
ATCCATCTGGGAAACGCGATCTCGT 663 37 1071 Antisense
CGATCTCGTCGAGAACTTGGCCGGG 531 247 1087 Antisense
Sequence Source Affymetrix Proprietary Database