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[189992_at] C-type lectin domain

Description F16H6.2 /REP_DB=WormBase Gene ID /WP=CE18598 /TR=Q9XTD4 /GB=CAB04132.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=C-type lectin domain
Cluster 6grp_total > 20      4grp_total > 23      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 4.4
(-3)
A 		6.8
(-1.7)
A 		4.5
(-2.9)
A 		15.7
(3)
A 		11
B 15.1
(3)
A 		2.9
(-2.2)
A 		5.6
(-1)
A 		0.9
(-3)
A 		14
C 51.6
(3)
A 		3.8
(-2.8)
A 		1.8
(-3)
A 		40.3
(1.6)
A 		50
avr 23.7
(3) 		4.5
(-2.8) 		4
(-3) 		19
(1.6) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 3.1
(-1.7)
A 		3.3
(-1.5)
A 		8.4
(1.3)
A 		11.4
(3)
A 		0.7
(-3)
A 		2
(-2.3)
A 		11
B 1.1
(-3)
A 		1.6
(-1.1)
A 		1.7
(-0.8)
A 		2.2
(1.1)
A 		2.7
(3)
A 		1.4
(-1.9)
A 		2
C 1.5
(-2.9)
A 		16.9
(3)
A 		4.9
(-1.6)
A 		1.9
(-2.8)
A 		10.1
(0.4)
A 		1.3
(-3)
A 		16
avr 1.9
(-2.7) 		7.3
(3) 		5
(0.6) 		5.2
(0.8) 		4.5
(0.1) 		1.6
(-3) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 1.6
(-0.8)
A 		1.5
(-1.4)
A 		1.2
(-3)
A 		2.3
(3)
A 		1
B 4.8
(3)
A 		0.7
(-2.3)
A 		1.3
(-1.6)
A 		0.2
(-3)
A 		5
C 17.1
(3)
A 		1.1
(-2.8)
A 		0.6
(-3)
A 		6.8
(-0.7)
A 		17
avr 7.8
(3) 		1.1
(-2.9) 		1
(-3) 		3.1
(-1.1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.6
(-2.1)
A 		1.2
(-0.8)
A 		1.8
(0.6)
A 		2.9
(3)
A 		0.2
(-3)
A 		0.5
(-2.3)
A 		3
B 0.4
(-3)
A 		0.5
(-2.1)
A 		0.4
(-3)
A 		0.6
(-1.3)
A 		1.1
(3)
A 		0.5
(-2.1)
A 		1
C 0.5
(-2.9)
A 		5.2
(3)
A 		1.3
(-1.9)
A 		0.4
(-3)
A 		3.3
(0.6)
A 		0.4
(-3)
A 		5
avr 0.5
(-3) 		2.3
(3) 		1.2
(-0.7) 		1.3
(-0.3) 		1.5
(0.3) 		0.5
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189992_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12991
Sequence Type Exemplar sequence
Representative Public ID F16H6.2 NCBI
Target Description F16H6.2 /REP_DB=WormBase Gene ID /WP=CE18598 /TR=Q9XTD4 /GB=CAB04132.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=C-type lectin domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075155(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075155 NCBI Caenorhabditis elegans F16H6.2 (F16H6.2) mRNA, complete cds. 11/11 None
SNAP00000001295 ENSEMBL cdna:SNAP chromosome:CEL140:V:18192494:18193530:1 9/11 None
GENEFINDER00000001308 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18192317:18193621:1 11/11 None
F16H6.2 ENSEMBL cdna:known chromosome:CEL140:V:18192134:18193621:1 gene:F16H6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18192133-18193621(+) 100.0 100.0
Public Domain and Genome References
Gene Title C-type lectin domain
Ensembl F16H6.2
Entrez Gene 184589 Entrez gene
SwissProt Q9XTD4 EMBL-EBI
WormBase CE18598 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04132 Hypothetical protein F16H6.2 [Caenorhabditis elegans] emb|CAB03936.1| Hypothetical protein F16H6.2 [Caenorhabditis elegans] ref|NP_507556.1| F16H6.2 [Caenorhabditis elegans] 5.0E-82
blast CAB04132 Hypothetical protein F16H6.2 [Caenorhabditis elegans] emb|CAB03936.1| Hypothetical protein F16H6.2 [Caenorhabditis elegans] ref|NP_507556.1| F16H6.2 [Caenorhabditis elegans] 1.0E-66
blast CAB04132 Hypothetical protein F16H6.2 [Caenorhabditis elegans] emb|CAB03936.1| Hypothetical protein F16H6.2 [Caenorhabditis elegans] ref|NP_507556.1| F16H6.2 [Caenorhabditis elegans] 8.0E-59
blast CAB03933 Hypothetical protein C31G12.2 [Caenorhabditis elegans] ref|NP_507555.1| C31G12.2 [Caenorhabditis elegans] 4.0E-48
blast CAB03933 Hypothetical protein C31G12.2 [Caenorhabditis elegans] ref|NP_507555.1| C31G12.2 [Caenorhabditis elegans] 1.0E-45
blast CAA20953 Hypothetical protein Y102A5C.7 [Caenorhabditis elegans] ref|NP_507279.1| Y102A5C.7 [Caenorhabditis elegans] 5.0E-39
blast CAB03933 Hypothetical protein C31G12.2 [Caenorhabditis elegans] ref|NP_507555.1| C31G12.2 [Caenorhabditis elegans] 3.0E-36
Sequence
Target Sequence 
>C. ELEGANS:189992_AT
gaattcgaacggcctagtggaacatggtgcattaagacgtttgctattgttgggagttgg
caagatggacaaaatggatgtgcgacgcatggagctgttctcagtggagttcagaatcaa
gcggaattagatttcatgtgtgattcggcggtagaaggtgcattttgggttggtggtcaa
aggacggccgcgtgtcctgggccaggattgaccgccacatgtaccgcgctgacatctttt
gagtggacagacggctcgacgaccggcaccgatggatggatttggaggccgatagaaccg
aacaacgcagcatgcacaagatccgatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTCGAACGGCCTAGTGGAACAT 112 325 97 Antisense
AGACGTTTGCTATTGTTGGGAGTTG 190 67 131 Antisense
GATGTGCGACGCATGGAGCTGTTCT 348 409 173 Antisense
GCATGGAGCTGTTCTCAGTGGAGTT 389 311 183 Antisense
GATTTCATGTGTGATTCGGCGGTAG 598 427 226 Antisense
GTAGAAGGTGCATTTTGGGTTGGTG 323 457 247 Antisense
GTGTCCTGGGCCAGGATTGACCGCC 640 469 288 Antisense
CCGCGCTGACATCTTTTGAGTGGAC 252 263 320 Antisense
GATTTGGAGGCCGATAGAACCGAAC 291 427 375 Antisense
AGAACCGAACAACGCAGCATGCACA 620 73 390 Antisense
CGCAGCATGCACAAGATCCGATTTT 489 253 402 Antisense
Sequence Source Affymetrix Proprietary Database