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[189991_at] 7TM chemoreceptor, sra family

Description T06G6.1 /REP_DB=WormBase Gene ID /WP=CE13333 /TR=O62367 /GB=CAB04701.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=7tm receptor protein
Cluster 6grp_total > 75      4grp_total > 05      6grp_cgc > 57      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 22.1
(2.3)
A 		5.7
(-3)
A 		24.3
(3)
A 		9.8
(-1.7)
A 		19
B 20.9
(-2.3)
A 		16.9
(-3)
A 		26.8
(-1.2)
A 		49.5
(3)
P 		33
C 29.9
(-0.8)
A 		11
(-2.3)
A 		2.1
(-3)
A 		77.7
(3)
A 		76
avr 24.3
(-0.7) 		11.2
(-3) 		17.7
(-1.9) 		45.7
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 8
(-2.1)
A 		4.8
(-2.7)
A 		36.4
(3)
A 		7
(-2.3)
A 		3.2
(-3)
A 		25
(0.9)
A 		33
B 4.7
(-3)
A 		6.2
(-2.6)
A 		9.2
(-1.8)
A 		7
(-2.4)
A 		25.1
(2.5)
A 		27.1
(3)
A 		22
C 22.4
(0.4)
A 		9.3
(-2)
A 		3.9
(-2.9)
A 		37.2
(3)
A 		3.6
(-3)
A 		11.7
(-1.6)
A 		34
avr 11.7
(-1) 		6.8
(-3) 		16.5
(1) 		17.1
(1.3) 		10.6
(-1.4) 		21.3
(3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 8
(3)
A 		1.2
(-3)
A 		6.4
(1.6)
A 		1.4
(-2.8)
A 		7
B 6.7
(-0.6)
A 		4.2
(-3)
A 		6.2
(-1.1)
A 		10.5
(3)
P 		6
C 9.9
(1.5)
A 		3.2
(-1.8)
A 		0.7
(-3)
A 		13.1
(3)
A 		12
avr 8.2
(2.9) 		2.9
(-3) 		4.4
(-1.3) 		8.3
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.5
(-2.6)
A 		1.7
(-2.4)
A 		7.9
(3)
A 		1.8
(-2.3)
A 		1
(-3)
A 		6.1
(1.4)
A 		7
B 1.6
(-3)
A 		2.1
(-2.7)
A 		2.2
(-2.6)
A 		1.9
(-2.8)
A 		10.2
(3)
A 		10.1
(2.9)
A 		9
C 8.3
(3)
A 		2.8
(-1.5)
A 		1
(-3)
A 		7.5
(2.3)
A 		1.2
(-2.8)
A 		3.9
(-0.6)
A 		7
avr 3.8
(-0.9) 		2.2
(-3) 		3.7
(-1) 		3.7
(-1) 		4.1
(-0.5) 		6.7
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189991_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1326
Sequence Type Exemplar sequence
Representative Public ID T06G6.1 NCBI
Target Description T06G6.1 /REP_DB=WormBase Gene ID /WP=CE13333 /TR=O62367 /GB=CAB04701.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=7tm receptor protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060818(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060818 NCBI Caenorhabditis elegans Serpentine Receptor, class A (alpha) family member (sra-23) (sra-23) mRNA, complete cds. 11/11 None
GENEFINDER00000021718 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12711556:12715104:1 11/11 None
SNAP00000021706 ENSEMBL cdna:SNAP chromosome:CEL140:I:12712172:12712848:1 11/11 None
T06G6.1 ENSEMBL cdna:known chromosome:CEL140:I:12711556:12712848:1 gene:T06G6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12711486-12712779(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sra family
Gene Symbol sra-23
Ensembl T06G6.1
Entrez Gene 188194 Entrez gene
SwissProt O62367 EMBL-EBI
WormBase CE13333 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04701 Hypothetical protein T06G6.1 [Caenorhabditis elegans] ref|NP_493219.1| Serpentine Receptor, class A (alpha) family member (sra-23) [Caenorhabditis elegans] sp|O62367|SRA23_CAEEL Serpentine receptor class alpha-23 (Protein sra-23) 0.0
blast CAB07602 Hypothetical protein F28C12.7 [Caenorhabditis elegans] emb|CAB04710.2| Hypothetical protein F28C12.7 [Caenorhabditis elegans] ref|NP_493218.2| Serpentine Receptor, class A (alpha) family member (sra-22) [Caenorhabditis elegans] sp|O17846|SRA22_CAEEL Serpentine receptor class alpha-22 (Protein sra-22) 1.0E-151
blast CAB07602 Hypothetical protein F28C12.7 [Caenorhabditis elegans] emb|CAB04710.2| Hypothetical protein F28C12.7 [Caenorhabditis elegans] ref|NP_493218.2| Serpentine Receptor, class A (alpha) family member (sra-22) [Caenorhabditis elegans] sp|O17846|SRA22_CAEEL Serpentine receptor class alpha-22 (Protein sra-22) 1.0E-148
blast CAB07597 Hypothetical protein F28C12.5 [Caenorhabditis elegans] ref|NP_493217.1| Serpentine Receptor, class A (alpha) family member (sra-21) [Caenorhabditis elegans] sp|O18690|SRA21_CAEEL Serpentine receptor class alpha-21 (Protein sra-21) 1.0E-146
blast CAB07597 Hypothetical protein F28C12.5 [Caenorhabditis elegans] ref|NP_493217.1| Serpentine Receptor, class A (alpha) family member (sra-21) [Caenorhabditis elegans] sp|O18690|SRA21_CAEEL Serpentine receptor class alpha-21 (Protein sra-21) 1.0E-144
blast CAB04701 Hypothetical protein T06G6.1 [Caenorhabditis elegans] ref|NP_493219.1| Serpentine Receptor, class A (alpha) family member (sra-23) [Caenorhabditis elegans] sp|O62367|SRA23_CAEEL Serpentine receptor class alpha-23 (Protein sra-23) 1.0E-107
Protein Domains
Database ID Description E-Value
Pfam IPR000344 EMBL-EBI Nematode chemoreceptor, Sra 5.8E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493219.1 6 32-54,114-136,149-171,202-219,248-270,285-304
T06G6.1 6 32-54,114-136,149-171,202-219,248-270,285-304
GENEFINDER00000021718 10 32-54,114-136,149-171,202-219,248-270,285-304,375-397,428-445,473-495,510-529
SNAP00000021706 4 5-27,57-74,103-125,140-159
Sequence
Target Sequence 
>C. ELEGANS:189991_AT
tttattgcgatatccctgctagtcctccagtttcttctcgcaatcttatcattttatatt
gcataccatggagtcccactagctggttatgtgccaatgtgcaactactacccaaaaatg
gcggtacaccatatcactattaacgacgtacgcacggtagttatggtatcatgcattata
gtcacggggttcgcatactatcttagtgtaaagtcagagaaacaaatccagaaatgcagt
tattcccctggagaacgatattctgcatatgagaatgttacaacatcgcaatcagtgtgc
atattaattgttcttcaattctcatgcaccatgatatcgtcattcggagtgaatctgctc
ttgatgatgcaagaagcagtgtcagaggaaacattcacaaaagttggtgcgttccttccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTATTGCGATATCCCTGCTAGTCC 678 673 460 Antisense
TTTCTTCTCGCAATCTTATCATTTT 177 673 490 Antisense
ATATTGCATACCATGGAGTCCCACT 237 19 515 Antisense
GAGTCCCACTAGCTGGTTATGTGCC 56 401 530 Antisense
CCAATGTGCAACTACTACCCAAAAA 220 275 553 Antisense
GGCGGTACACCATATCACTATTAAC 470 541 579 Antisense
ACGACGTACGCACGGTAGTTATGGT 472 91 602 Antisense
TAGTCACGGGGTTCGCATACTATCT 176 653 638 Antisense
CATGCACCATGATATCGTCATTCGG 201 211 782 Antisense
GTCATTCGGAGTGAATCTGCTCTTG 523 467 798 Antisense
CACAAAAGTTGGTGCGTTCCTTCCG 359 191 855 Antisense
Sequence Source Affymetrix Proprietary Database