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[189989_s_at]

Description R02D5.2 /REP_DB=WormBase Gene ID /WP=CE12488 /CHR=5 /FEA=Sanger Annotation /DEF=C-type lectin domain (HINXTON) TR:Q21637 protein_id:CAB01434.1
Cluster 6grp_high1_10_10 > 52      6grp_total > 52      4grp_total > 21      6grp_cgc > 92      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 33.3
(1.3)
A 		2.1
(-3)
A 		2.1
(-3)
A 		45.2
(3)
P 		43
B 30.2
(1.7)
A 		34.9
(3)
A 		12.4
(-3)
A 		29.6
(1.6)
A 		23
C 31.6
(-0.8)
P 		29.8
(-1.3)
A 		23.9
(-3)
A 		44.9
(3)
A 		21
avr 31.7
(1.2) 		22.3
(-0.9) 		12.8
(-3) 		39.9
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 54.2
(-1.1)
A 		65.6
(-0.4)
P 		126.1
(3)
P 		65.8
(-0.4)
P 		20.8
(-3)
A 		22.2
(-2.9)
A 		105
B 39.7
(-2.7)
P 		69.5
(-1.2)
P 		153.8
(3)
P 		60.3
(-1.7)
P 		73.1
(-1)
P 		33.3
(-3)
P 		121
C 47.1
(-1.3)
P 		80.8
(1.1)
P 		101
(2.6)
P 		107
(3)
P 		56.8
(-0.6)
P 		22.9
(-3)
A 		84
avr 47
(-1.8) 		72
(-0.3) 		127
(3) 		77.7
(0.1) 		50.2
(-1.6) 		26.1
(-3) 		101
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 12.1
(3)
A 		0.5
(-3)
A 		0.5
(-3)
A 		6.6
(0.2)
P 		12
B 9.6
(3)
A 		8.6
(2.1)
A 		2.9
(-3)
A 		6.3
(0)
A 		7
C 10.5
(3)
P 		8.6
(-0.9)
A 		8.3
(-1.6)
A 		7.6
(-3)
A 		3
avr 10.7
(3) 		5.9
(-1.2) 		3.9
(-3) 		6.8
(-0.4) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 10
(-1.8)
A 		23.3
(1.9)
P 		27.5
(3)
P 		16.7
(0.1)
P 		6.3
(-2.8)
A 		5.4
(-3)
A 		22
B 13.8
(-2.7)
P 		23.1
(-0.4)
P 		37.3
(3)
P 		16
(-2.1)
P 		29.7
(1.2)
P 		12.4
(-3)
P 		25
C 17.5
(0.3)
P 		24.7
(2.7)
P 		25.7
(3)
P 		21.5
(1.6)
P 		18.4
(0.6)
P 		7.7
(-3)
A 		18
avr 13.8
(-1.5) 		23.7
(1.2) 		30.2
(3) 		18.1
(-0.3) 		18.1
(-0.3) 		8.5
(-3) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189989_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14238
Sequence Type Exemplar sequence
Representative Public ID R02D5.2 NCBI
Target Description R02D5.2 /REP_DB=WormBase Gene ID /WP=CE12488 /CHR=5 /FEA=Sanger Annotation /DEF=C-type lectin domain (HINXTON) TR:Q21637 protein_id:CAB01434.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074190(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074190 NCBI Caenorhabditis elegans C-type LECtin family member (clec-55) (clec-55) mRNA, complete cds. 11/11 A 
SNAP00000007911 ENSEMBL cdna:SNAP chromosome:CEL140:V:14482392:14484784:1 11/11 None
F08H9.9 ENSEMBL cdna:known chromosome:CEL140:V:14481873:14484784:1 gene:F08H9.9 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000007925 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14484172-14484784(+) 98.97 100.0
Public Domain and Genome References
Gene Title
Gene Symbol clec-55
Ensembl F08H9.9
Entrez Gene 184218 Entrez gene
SwissProt Q9XTF9 EMBL-EBI
WormBase CE19781 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01438 Hypothetical protein F08H9.9 [Caenorhabditis elegans] emb|CAB01152.1| Hypothetical protein F08H9.9 [Caenorhabditis elegans] ref|NP_506591.1| C-type LECtin family member (clec-55) [Caenorhabditis elegans] 0.0
blast CAB01145 Hypothetical protein F08H9.8 [Caenorhabditis elegans] ref|NP_506590.2| C-type LECtin family member (clec-54) [Caenorhabditis elegans] 0.0
blast CAB01438 Hypothetical protein F08H9.9 [Caenorhabditis elegans] emb|CAB01152.1| Hypothetical protein F08H9.9 [Caenorhabditis elegans] ref|NP_506591.1| C-type LECtin family member (clec-55) [Caenorhabditis elegans] 1.0E-139
blast CAE60888 Hypothetical protein CBG04603 [Caenorhabditis briggsae] 1.0E-131
blast CAB01145 Hypothetical protein F08H9.8 [Caenorhabditis elegans] ref|NP_506590.2| C-type LECtin family member (clec-54) [Caenorhabditis elegans] 1.0E-113
blast T23853 hypothetical protein R02D5.2 - Caenorhabditis elegans 4.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 9.7E-6
Pfam IPR000859 EMBL-EBI CUB 2.8E-21
Pfam IPR000859 EMBL-EBI CUB 6.2E-15
Pfam IPR000859 EMBL-EBI CUB 2.8E-21
Pfam IPR000859 EMBL-EBI CUB 6.2E-15
Sequence
Target Sequence 
>C. ELEGANS:189989_S_AT
gcaacttcatcttctaaactcacttttgaaagcaccagcaactcagtatctctggtattc
catacagataagactgttactaaaaaaggatggcttctgaactggaatgcaaaggcctat
acgccaaatgtaaaccaaagtggaaatggcggaaactttacatcacctaattatccaaat
gactatgattcctatacagagcaaatgtattatttctcagttgctgatggattccaagtg
aacgttacaattgatgatttcctaacagagaacagatttgatgttctagaagtttatgat
aattacacaattcctggagtcaatatgattgcaaacttaaccggtgattcaattgctcca
tggaattggctctctcaatccagccacgttacaatgagattccgaaccgatggaactaac
cagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAACTTCATCTTCTAAACTCACTT 530 539 40 Antisense
CTAAACTCACTTTTGAAAGCACCAG 411 225 53 Antisense
GCAACTCAGTATCTCTGGTATTCCA 391 317 77 Antisense
AAAAAGGATGGCTTCTGAACTGGAA 488 127 122 Antisense
ACTGGAATGCAAAGGCCTATACGCC 416 97 140 Antisense
GGCCTATACGCCAAATGTAAACCAA 669 541 153 Antisense
GAGCAAATGTATTATTTCTCAGTTG 206 391 238 Antisense
GATAATTACACAATTCCTGGAGTCA 249 423 337 Antisense
TCTCAATCCAGCCACGTTACAATGA 607 613 412 Antisense
CAGCCACGTTACAATGAGATTCCGA 211 203 420 Antisense
TCCGAACCGATGGAACTAACCAGAA 528 591 440 Antisense
Sequence Source Affymetrix Proprietary Database