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[189988_s_at] zinc finger protein

Description ZC513.6 /REP_DB=WormBase Gene ID /WP=CE07613 /TR=Q23359 /GB=AAC48268.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 98      4grp_total > 22      6grp_cgc > 69      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 102.9
(-3)
A
103.5
(-2.9)
A
108.3
(-2.1)
A
137.6
(3)
M
35
B 100.9
(3)
A
97.8
(2.5)
A
84.7
(0.1)
A
66.9
(-3)
A
34
C 118.8
(2.6)
A
109.5
(-3)
A
117
(1.5)
A
119.4
(3)
A
10
avr 107.5
(2.4)
103.6
(-2.6)
103.3
(-3)
108
(3)
5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2507
1 2 3 4 5 6 range
A 77.9
(-2.9)
A
45.7
(-3)
A
132.4
(-2.8)
M
241.5
(-2.5)
P
1206.9
(-0.2)
P
2552.3
(3)
P
2507
B 106.3
(-3)
A
97.2
(-3)
A
132.5
(-2.9)
A
239.4
(-2.6)
P
1221.7
(0.5)
P
2022.6
(3)
P
1925
C 61.5
(-3)
A
59.2
(-3)
A
159.8
(-2.6)
A
239.3
(-2.3)
P
1262.8
(1.7)
P
1590.4
(3)
P
1531
avr 81.9
(-3)
67.4
(-3)
141.6
(-2.8)
240.1
(-2.5)
1230.5
(0.5)
2055.1
(3)
1988
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 37.4
(3)
A
22.5
(-2.2)
A
28.3
(-0.2)
A
20.1
(-3)
M
17
B 32.2
(3)
A
24.2
(0.3)
A
19.6
(-1.2)
A
14.2
(-3)
A
18
C 39.3
(2.6)
A
31.5
(0.3)
A
40.8
(3)
A
20.1
(-3)
A
21
avr 36.3
(3)
26.1
(-0.4)
29.6
(0.8)
18.1
(-3)
18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 740
1 2 3 4 5 6 range
A 14.4
(-3)
A
16.3
(-3)
A
28.8
(-2.9)
M
61.3
(-2.5)
P
364.2
(0.5)
P
621.4
(3)
P
607
B 37
(-3)
A
32.3
(-3)
A
32.2
(-3)
A
63.4
(-2.7)
P
496.4
(0.9)
P
754.2
(3)
P
722
C 22.8
(-2.9)
A
18.1
(-3)
A
40.7
(-2.7)
A
48.1
(-2.7)
P
408.6
(1.6)
P
532.4
(3)
P
514
avr 24.7
(-3)
22.2
(-3)
33.9
(-2.9)
57.6
(-2.7)
423.1
(0.9)
636
(3)
614
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189988_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11859
Sequence Type Exemplar sequence
Representative Public ID ZC513.6 NCBI
Target Description ZC513.6 /REP_DB=WormBase Gene ID /WP=CE07613 /TR=Q23359 /GB=AAC48268.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072668(11)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_072668 NCBI Caenorhabditis elegans Oocyte MAturation defective family member (oma-2) (oma-2) mRNA, complete cds. 11/11 None
SNAP00000025307 ENSEMBL cdna:SNAP chromosome:CEL140:V:8030355:8033511:1 11/11 None
GENEFINDER00000025320 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8030507:8033511:1 11/11 None
ZC513.6 ENSEMBL cdna:known chromosome:CEL140:V:8032028:8033791:1 gene:ZC513.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8032100-8033512(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol oma-2
Ensembl ZC513.6
Entrez Gene 179183 Entrez gene
SwissProt Q23359 EMBL-EBI
WormBase CE07613 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC48268 Oocyte maturation defective protein 2 [Caenorhabditis elegans] ref|NP_505069.1| Oocyte MAturation defective family member (oma-2) [Caenorhabditis elegans] 0.0
blast AAK71366 Hypothetical protein F43H9.4 [Caenorhabditis elegans] ref|NP_505068.1| F43H9.4 [Caenorhabditis elegans] 1.0E-129
blast CAE74060 Hypothetical protein CBG21712 [Caenorhabditis briggsae] 1.0E-118
blast CAA90986 Hypothetical protein C09G9.6 [Caenorhabditis elegans] emb|CAA90977.1| Hypothetical protein C09G9.6 [Caenorhabditis elegans] ref|NP_501542.1| Oocyte MAturation defective family member (oma-1) [Caenorhabditis elegans] 1.0E-114
Protein Domains
Database ID Description E-Value
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 4.1E-11
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.5E-12
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 4.1E-11
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.5E-12
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 4.1E-11
Pfam IPR000571 EMBL-EBI Zn-finger, C-x8-C-x5-C-x3-H type 1.5E-12
Sequence
Target Sequence
>C. ELEGANS:189988_S_AT
aggtttcgcaacgtcatgctttggccgaccttcgcgatcaaatggagcatcatatcatga
atggaggtcgttctacagccggccctcaacaatttgatatgtttgcaaggccatgcacac
cagatgagccagcagcaaatatgccattgggtccaaccccagttagcattcgtggaccac
gatacgagttgccatcgaagaagccacttgagactgaggaagccgggaatcgcccaccat
caagctggccgttggatccatcaactttcttcgcattggatagtctgaatatggcaactc
gtccaatcagtccgtttgagtctatgcttattggagcagccgggaacatgcaatactcta
tgcttggaaaacaatcaacaccgggaggagtttcgggatattcttcctctggatcaactc
cgtctcaagatagtgattcgtctccactcacagctgcttctgctgctgcagatgctgcct
gccaagccaactcggagtctgctcagtctattcttctga


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
AGGTTTCGCAACGTCATGCTTTGGC 566 57 575 Antisense
GCCGACCTTCGCGATCAAATGGAGC 245 283 598 Antisense
GGCCATGCACACCAGATGAGCCAGC 545 541 683 Antisense
CCAACCCCAGTTAGCATTCGTGGAC 61 277 727 Antisense
GTGGACCACGATACGAGTTGCCATC 337 491 746 Antisense
GATCCATCAACTTTCTTCGCATTGG 616 415 829 Antisense
ATATGGCAACTCGTCCAATCAGTCC 434 21 863 Antisense
GATATTCTTCCTCTGGATCAACTCC 260 427 971 Antisense
AGATAGTGATTCGTCTCCACTCACA 129 67 1002 Antisense
TGCCAAGCCAACTCGGAGTCTGCTC 187 585 1054 Antisense
GAGTCTGCTCAGTCTATTCTTCTGA 94 401 1069 Antisense
Sequence Source Affymetrix Proprietary Database