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[189986_at]

Description M03D4.4 /REP_DB=WormBase Gene ID /WP=CE12352 /TR=Q21494 /GB=AAC24408.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=zinc-finger protein
Cluster 6grp_highest_10_10 > 31      6grp_high1_10_10 > 13      6grp_highest_nonorm > 70      6grp_total > 14      4grp_total > 53      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 643
1 2 3 4 range
A 544.2
(3)
P 		419
(1.5)
P 		178.6
(-1.4)
P 		47.5
(-3)
A 		497
B 509.5
(3)
P 		455.8
(2.4)
P 		245.5
(-0.2)
P 		6.8
(-3)
A 		503
C 650.2
(3)
P 		384.9
(0.1)
P 		221.7
(-1.6)
P 		94.1
(-3)
A 		556
avr 568
(3) 		419.9
(1.3) 		215.3
(-1.1) 		49.5
(-3) 		519

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 430
1 2 3 4 5 6 range
A 492.2
(3)
P 		473.2
(2.7)
P 		272.4
(-0.5)
P 		212.8
(-1.4)
P 		184.8
(-1.9)
P 		112.1
(-3)
P 		380
B 493.4
(3)
P 		448.2
(2.3)
P 		322.9
(0.4)
P 		291.8
(-0.1)
P 		102.4
(-2.9)
P 		97.8
(-3)
P 		396
C 520.1
(3)
P 		429.1
(1.7)
P 		349.7
(0.6)
P 		306.5
(0)
P 		152.5
(-2.1)
P 		89.7
(-3)
P 		430
avr 501.9
(3) 		450.2
(2.2) 		315
(0.2) 		270.4
(-0.5) 		146.6
(-2.3) 		99.9
(-3) 		402
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 214
1 2 3 4 range
A 198.1
(3)
P 		91
(-0.4)
P 		46.7
(-1.8)
P 		6.9
(-3)
A 		191
B 162.5
(3)
P 		112.6
(1.1)
P 		56.9
(-0.9)
P 		1.5
(-3)
A 		161
C 215.2
(3)
P 		110.7
(-0.1)
P 		77.3
(-1.2)
P 		15.9
(-3)
A 		199
avr 191.9
(3) 		104.8
(0.2) 		60.3
(-1.3) 		8.1
(-3) 		184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 166
1 2 3 4 5 6 range
A 90.7
(-0.3)
P 		168.3
(3)
P 		59.3
(-1.6)
P 		54
(-1.9)
P 		55.8
(-1.8)
P 		27.3
(-3)
P 		141
B 171.7
(3)
P 		149.2
(2)
P 		78.4
(-1.1)
P 		77.3
(-1.2)
P 		41.6
(-2.8)
P 		36.5
(-3)
P 		135
C 192.8
(3)
P 		130.9
(0.7)
P 		89
(-0.8)
P 		61.6
(-1.8)
P 		49.3
(-2.3)
P 		30
(-3)
P 		163
avr 151.7
(3) 		149.5
(2.9) 		75.6
(-0.8) 		64.3
(-1.4) 		48.9
(-2.1) 		31.3
(-3) 		120
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189986_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11020
Sequence Type Exemplar sequence
Representative Public ID M03D4.4 NCBI
Target Description M03D4.4 /REP_DB=WormBase Gene ID /WP=CE12352 /TR=Q21494 /GB=AAC24408.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=zinc-finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028142(11), NM_001028143(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028142 NCBI Caenorhabditis elegans M03D4.4a (M03D4.4) mRNA, complete cds. 11/11 None
NM_001028143 NCBI Caenorhabditis elegans M03D4.4b (M03D4.4) mRNA, complete cds. 11/11 None
SNAP00000036223 ENSEMBL cdna:SNAP chromosome:CEL140:IV:6122104:6125641:-1 11/11 None
GENEFINDER00000036227 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6122104:6127279:-1 11/11 None
M03D4.4a ENSEMBL cdna:known chromosome:CEL140:IV:6121762:6127286:-1 gene:M03D4.4 11/11 None
M03D4.4b ENSEMBL cdna:known chromosome:CEL140:IV:6122104:6125182:-1 gene:M03D4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6122827-6127285(-) 100.0 100.0
Public Domain and Genome References
Ensembl M03D4.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24408 Hypothetical protein M03D4.4a [Caenorhabditis elegans] ref|NP_001023313.1| M03D4.4a [Caenorhabditis elegans] 0.0
blast AAV58862 Hypothetical protein M03D4.4b [Caenorhabditis elegans] ref|NP_001023314.1| M03D4.4b [Caenorhabditis elegans] 0.0
blast CAE61600 Hypothetical protein CBG05518 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.8E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.7E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.7E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.8E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.8E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.7E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.7E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.8E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.8E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.7E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.7E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.8E-5
Sequence
Target Sequence 
>C. ELEGANS:189986_AT
ggaacgcattgaacacacttttggttaagcagcacgagaatattctgaataataataata
ataatgaaagtaatattttgaatggaagtgtgatgcataaggatgctgggttcgagattc
cagctccaacaattccactcagcttaacatgtatgatctgcaaatctcaattcaatagtc
aaccatcctttacacttcacatgtacatgcaccatattgcgaatcaaaatccaaatttat
cgattgattccacccatatccatcatactcatcaacctacaacaatcagccatcaaaatg
atccaactcctcttggatcggactctgatctagccactgatacatcatgtgcttcaagtc
ctcaaaagacatcaccacttcagcttctcgagtcatcatgtctcgaacaaagctcagtga
gcccgtcgagttcttctggagcttcacctcaaccaactgcttcggaatcttcaacgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACGCATTGAACACACTTTTGGT 70 531 842 Antisense
CCAACAATTCCACTCAGCTTAACAT 679 275 967 Antisense
AATAGTCAACCATCCTTTACACTTC 247 171 1015 Antisense
TATCGATTGATTCCACCCATATCCA 440 659 1079 Antisense
CATATCCATCATACTCATCAACCTA 263 215 1096 Antisense
ATCCAACTCCTCTTGGATCGGACTC 209 39 1142 Antisense
GACTCTGATCTAGCCACTGATACAT 576 373 1162 Antisense
GATACATCATGTGCTTCAAGTCCTC 662 423 1180 Antisense
AAAAGACATCACCACTTCAGCTTCT 215 133 1205 Antisense
TCAGCTTCTCGAGTCATCATGTCTC 424 625 1221 Antisense
CAACTGCTTCGGAATCTTCAACGTC 17 187 1295 Antisense
Sequence Source Affymetrix Proprietary Database