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[189984_s_at] N-methyltransferase

Description T07C12.9 /REP_DB=WormBase Gene ID /WP=CE21160 /TR=Q22279 /GB=CAA98282.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=N-methyltransferase
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 42      4grp_highest_8_8 > 43      4grp_high_8_8 > 24      6grp_highest_nonorm > 33      6grp_total > 20      4grp_total > 55      6grp_highest_sub > 02_03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 749
1 2 3 4 range
A 1316.6
(3)
P 		816.2
(-3)
P 		1064.8
(-0)
P 		1147.5
(1)
P 		500
B 1565.4
(3)
P 		932.9
(-3)
P 		1188.4
(-0.6)
P 		990.6
(-2.5)
P 		633
C 1467.2
(3)
P 		921
(-3)
P 		1085.1
(-1.2)
P 		1129.8
(-0.7)
P 		546
avr 1449.7
(3) 		890
(-3) 		1112.8
(-0.6) 		1089.3
(-0.9) 		560

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1811
1 2 3 4 5 6 range
A 1073.6
(-1.2)
P 		2337.3
(3)
P 		2331.3
(3)
P 		1698.1
(0.9)
P 		1204.5
(-0.8)
P 		526.3
(-3)
P 		1811
B 1074.3
(-1.6)
P 		2307.5
(3)
P 		2164.1
(2.5)
P 		1881.1
(1.4)
P 		1387.6
(-0.4)
P 		695.3
(-3)
P 		1612
C 924.5
(-2.4)
P 		2303.6
(3)
P 		2206.6
(2.6)
P 		1509.8
(-0.1)
P 		1484.5
(-0.2)
P 		769.2
(-3)
P 		1534
avr 1024.1
(-1.7) 		2316.1
(3) 		2234
(2.7) 		1696.3
(0.7) 		1358.9
(-0.5) 		663.6
(-3) 		1653
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 331
1 2 3 4 range
A 479.4
(3)
P 		177.2
(-2.8)
P 		278.3
(-0.9)
P 		168
(-3)
P 		311
B 499.2
(3)
P 		230.4
(-2.6)
P 		275.4
(-1.7)
P 		211.1
(-3)
P 		288
C 485.7
(3)
P 		264.8
(-1.5)
P 		378.2
(0.8)
P 		190.5
(-3)
P 		295
avr 488.1
(3) 		224.1
(-2.3) 		310.6
(-0.6) 		189.9
(-3) 		298

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 703
1 2 3 4 5 6 range
A 197.9
(-2.4)
P 		831.3
(3)
P 		507.7
(0.2)
P 		430.7
(-0.4)
P 		363.5
(-1)
P 		128.1
(-3)
P 		703
B 373.8
(-1.6)
P 		768.1
(3)
P 		525.5
(0.1)
P 		498.2
(-0.2)
P 		563.8
(0.6)
P 		259.3
(-3)
P 		509
C 342.7
(-1.9)
P 		702.9
(3)
P 		561.6
(1.1)
P 		303.6
(-2.4)
P 		480.4
(0)
P 		257.5
(-3)
P 		445
avr 304.8
(-2) 		767.4
(3) 		531.6
(0.4) 		410.8
(-0.9) 		469.2
(-0.2) 		215
(-3) 		552
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189984_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12314
Sequence Type Exemplar sequence
Representative Public ID T07C12.9 NCBI
Target Description T07C12.9 /REP_DB=WormBase Gene ID /WP=CE21160 /TR=Q22279 /GB=CAA98282.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=N-methyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073162(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073162 NCBI Caenorhabditis elegans T07C12.9 (N-methyltransferase) mRNA, complete cds. 11/11 None
SNAP00000001532 ENSEMBL cdna:SNAP chromosome:CEL140:V:9959714:9960882:-1 11/11 None
GENEFINDER00000001540 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9959714:9960882:-1 11/11 None
T07C12.9 ENSEMBL cdna:known chromosome:CEL140:V:9959525:9960913:-1 gene:T07C12.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9959713-9960882(-) 100.0 100.0
Public Domain and Genome References
Gene Title N-methyltransferase
Ensembl T07C12.9
Entrez Gene 179385 Entrez gene
SwissProt Q22279 EMBL-EBI
WormBase CE21160 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8168 methyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA98282 Hypothetical protein T07C12.9 [Caenorhabditis elegans] ref|NP_505563.1| T07C12.9 [Caenorhabditis elegans] 1.0E-166
blast CAE72287 Hypothetical protein CBG19415 [Caenorhabditis briggsae] 1.0E-146
blast AAT11866 putative phenylethanolamine N-methyltransferase isoform a [Dictyocaulus viviparus] gb|AAT11865.1| putative phenylethanolamine N-methyltransferase [Dictyocaulus viviparus] 1.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR000940 EMBL-EBI Methyltransferase, NNMT/PNMT/TEMT 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:189984_S_AT
caagatgttggacttcggagccgggccgactatccacgtggctgcatgcttccgtgaaac
ggcgaacgagatccacctggctgattatttgccacaaaaccgcgacgagttatacagatg
ggtgaacaatgaaagcaagtttgactggacaatcccattgagaatgattttaacgagaga
aggaagaacctgggataagctgtcaactgtggaacctgaaactagagacaagattgttga
tatttaccactgtgacgttttccaaaacccctctgttgtttgtccaaaggacatctatgg
acagtttgacgcagtagttaccatcttctgtgtcgaatactgttgcaacactctctccga
gtactataattcaatcaaaaacaccgctggagcagtgaagcctggcggctacctcattta
tggtggaatctttgaagagacatggtgcagctttggtggtcgtaaattcacatgtctcta
cataaccaaagaagtaatgctcgatgcattggctaaagctgatcttttcgttgaggagaa
tgaccgtggatgtgttctttatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGATGTTGGACTTCGGAGCCGGG 104 185 255 Antisense
GCTGCATGCTTCCGTGAAACGGCGA 694 293 295 Antisense
GAACGAGATCCACCTGGCTGATTAT 608 347 318 Antisense
GATAAGCTGTCAACTGTGGAACCTG 172 423 448 Antisense
TATTTACCACTGTGACGTTTTCCAA 322 661 495 Antisense
GTAGTTACCATCTTCTGTGTCGAAT 237 457 568 Antisense
CGAATACTGTTGCAACACTCTCTCC 360 253 588 Antisense
AAACACCGCTGGAGCAGTGAAGCCT 147 129 633 Antisense
TGGCGGCTACCTCATTTATGGTGGA 423 541 657 Antisense
CATGGTGCAGCTTTGGTGGTCGTAA 465 209 695 Antisense
ATGACCGTGGATGTGTTCTTTATGA 553 43 794 Antisense
Sequence Source Affymetrix Proprietary Database