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[189983_at]

Description B0365.5 /REP_DB=WormBase Gene ID /WP=CE07722 /TR=P90733 /GB=CAB02692.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=C-type lectin domain
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 11      6grp_highest_nonorm > 61      6grp_total > 32      4grp_total > 49      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 928
1 2 3 4 range
A 62.1
(-2.9)
A 		913.5
(3)
P 		595.3
(0.8)
P 		41.7
(-3)
A 		872
B 71.9
(-2.9)
P 		824.8
(2.1)
P 		969.9
(3)
P 		49.5
(-3)
M 		920
C 74.6
(-3)
P 		799.8
(3)
P 		782.8
(2.9)
P 		89.6
(-2.9)
A 		725
avr 69.5
(-2.9) 		846
(3) 		782.7
(2.5) 		60.3
(-3) 		786

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 710
1 2 3 4 5 6 range
A 505.9
(1.3)
P 		526.8
(1.5)
P 		558.3
(1.9)
P 		666.2
(3)
P 		339.2
(-0.4)
P 		91.3
(-3)
P 		575
B 497
(1.5)
P 		578.8
(2.4)
P 		628.1
(3)
P 		436.4
(0.8)
P 		315.8
(-0.6)
P 		103.9
(-3)
P 		524
C 801.6
(3)
P 		594.9
(1.2)
P 		540.5
(0.7)
P 		610
(1.3)
P 		385.4
(-0.7)
P 		117.9
(-3)
P 		684
avr 601.5
(3) 		566.8
(2.6) 		575.6
(2.7) 		570.9
(2.6) 		346.8
(-0.1) 		104.4
(-3) 		497
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 267
1 2 3 4 range
A 22.6
(-2.5)
A 		198.3
(3)
P 		155.6
(1.7)
P 		6.1
(-3)
A 		192
B 22.9
(-2.7)
P 		203.7
(2.4)
P 		224.7
(3)
P 		10.6
(-3)
M 		214
C 24.7
(-2.8)
P 		230
(2)
P 		272.8
(3)
P 		15.1
(-3)
A 		258
avr 23.4
(-2.6) 		210.7
(2.8) 		217.7
(3) 		10.6
(-3) 		207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 275
1 2 3 4 5 6 range
A 93.3
(-0.4)
P 		187.3
(3)
P 		121.6
(0.6)
P 		169
(2.3)
P 		102.4
(-0.1)
P 		22.2
(-3)
P 		165
B 172.9
(2.2)
P 		192.7
(3)
P 		152.5
(1.4)
P 		115.6
(-0)
P 		128.3
(0.5)
P 		38.7
(-3)
P 		154
C 297.1
(3)
P 		181.5
(0.3)
P 		137.6
(-0.7)
P 		122.7
(-1.1)
P 		124.7
(-1)
P 		39.5
(-3)
P 		258
avr 187.8
(3) 		187.2
(3) 		137.2
(1) 		135.8
(1) 		118.5
(0.3) 		33.5
(-3) 		154
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189983_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12616
Sequence Type Exemplar sequence
Representative Public ID B0365.5 NCBI
Target Description B0365.5 /REP_DB=WormBase Gene ID /WP=CE07722 /TR=P90733 /GB=CAB02692.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=C-type lectin domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026178(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026178 NCBI Caenorhabditis elegans B0365.5a (B0365.5) mRNA, complete cds. 10/11 None
GENEFINDER00000032434 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:13134609:13137428:-1 10/11 None
B0365.5 ENSEMBL cdna:known chromosome:CEL140:V:13134031:13137448:-1 gene:B0365.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001026179 8/11 Cross Hyb Matching Probes None
SNAP00000032431 8/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181942 2 1 NM_001026178 189983_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:13134030-13137428(-) 100.0 100.0
Public Domain and Genome References
Ensembl B0365.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02692 Hypothetical protein B0365.5a [Caenorhabditis elegans] ref|NP_001021349.1| B0365.5a [Caenorhabditis elegans] 0.0
blast CAB02692 Hypothetical protein B0365.5a [Caenorhabditis elegans] ref|NP_001021349.1| B0365.5a [Caenorhabditis elegans] 1.0E-179
blast CAE64661 Hypothetical protein CBG09433 [Caenorhabditis briggsae] 1.0E-170
blast CAE64661 Hypothetical protein CBG09433 [Caenorhabditis briggsae] 1.0E-168
blast CAE64661 Hypothetical protein CBG09433 [Caenorhabditis briggsae] 1.0E-139
blast CAI91176 Hypothetical protein B0365.5b [Caenorhabditis elegans] ref|NP_001021350.1| B0365.5b [Caenorhabditis elegans] 1.0E-116
blast CAI91176 Hypothetical protein B0365.5b [Caenorhabditis elegans] ref|NP_001021350.1| B0365.5b [Caenorhabditis elegans] 1.0E-114
blast CAI91176 Hypothetical protein B0365.5b [Caenorhabditis elegans] ref|NP_001021350.1| B0365.5b [Caenorhabditis elegans] 2.0E-82
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021349.1 1 7-29
B0365.5 1 7-29
GENEFINDER00000032434 1 7-29
Sequence
Target Sequence 
>C. ELEGANS:189983_AT
gatggatcagtgccacgtgtgatttggcagagtatcatgctatttcactgtcagtatctg
ctgaaacggacccaaatgccccaagtgaatgcctttcaaaatgtcttactcctctagcca
aactgcaaagaagtttctcctatgtgtttaacaactttgaaaaagtttgcgacttgctcg
aagacggagcattttgtgcaagaaagtgcactcaagaggaccaaacgaagttctaccagt
acactactttttatcgaattcattgcattgactatgaagaaggttatattcaagagcatt
tgacatgcattgcaaaagccgctgaagatgctgatttggtgtgtaaagacaaatgtaagc
aagcccataaagtggagaaaactgcaagcaaggaaacaaaaatgaagaaagaatgtttga
cattggaatgttcgacactatgctattttgatgaacttgctgaaagctgtccagaagcta
gaaatgttcttttgaaaaataatcaaagtaaatgttccgccaacaaacttgaattcttgg
aacttgaaaataagcttaagatgattttgcctgcgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGATCAGTGCCACGTGTGATTT 639 407 419 Antisense
GTATCATGCTATTTCACTGTCAGTA 70 455 450 Antisense
CAGTATCTGCTGAAACGGACCCAAA 238 205 470 Antisense
AAATGCCCCAAGTGAATGCCTTTCA 698 117 492 Antisense
TGCCTTTCAAAATGTCTTACTCCTC 296 583 508 Antisense
CTTACTCCTCTAGCCAAACTGCAAA 344 221 523 Antisense
AAGTTTGCGACTTGCTCGAAGACGG 571 155 581 Antisense
AACGAAGTTCTACCAGTACACTACT 258 97 642 Antisense
GTACACTACTTTTTATCGAATTCAT 55 461 657 Antisense
GAATGTTCGACACTATGCTATTTTG 608 331 844 Antisense
GCTTAAGATGATTTTGCCTGCGATT 118 305 972 Antisense
Sequence Source Affymetrix Proprietary Database