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[189982_at]

Description B0024.1_rc /REP_DB=WormBase Gene ID /WP=CE05146 /TR=Q17417 /GB=CAA94874.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /REVCOMP /DEF=collagen
Cluster 6grp_total > 0      4grp_total > 09      6grp_total_sub > Hat      6grp_cgc > 53      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 1.4
(-3)
A 		2.4
(-2)
A 		3.3
(-1.2)
A 		7.6
(3)
A 		6
B 1.5
(-3)
A 		2.7
(-2.8)
A 		4.2
(-2.6)
A 		37.8
(3)
A 		36
C 2.9
(-3)
A 		7.4
(0.2)
A 		9.1
(1.4)
A 		11.4
(3)
A 		9
avr 1.9
(-3) 		4.2
(-2.2) 		5.5
(-1.7) 		18.9
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.4
(3)
A 		1.8
(-3)
A 		2.1
(0)
A 		2.1
(0)
A 		1.9
(-2)
A 		2
(-1)
A 		1
B 2
(-2.4)
A 		2.1
(-2.2)
A 		1.6
(-3)
A 		2.3
(-1.9)
A 		3.3
(-0.4)
A 		5.5
(3)
A 		4
C 2.4
(-2.5)
A 		14.6
(3)
A 		2.2
(-2.6)
A 		3.6
(-2)
A 		1.3
(-3)
A 		1.4
(-3)
A 		13
avr 2.3
(-2.6) 		6.2
(3) 		2
(-3) 		2.7
(-2) 		2.2
(-2.7) 		3
(-1.6) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.5
(-3)
A 		0.5
(-3)
A 		0.9
(1)
A 		1.1
(3)
A 		1
B 0.5
(-3)
A 		0.7
(-2.8)
A 		1
(-2.6)
A 		8.1
(3)
A 		8
C 1
(-3)
A 		2.1
(0)
A 		3.2
(3)
A 		1.9
(-0.5)
A 		2
avr 0.7
(-3) 		1.1
(-2.2) 		1.7
(-1) 		3.7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.6
(3)
A 		0.5
(0)
A 		0.5
(0)
A 		0.6
(3)
A 		0.5
(0)
A 		0
B 0.7
(-1.9)
A 		0.7
(-1.9)
A 		0.4
(-3)
A 		0.6
(-2.3)
A 		1.3
(0.4)
A 		2
(3)
A 		2
C 0.9
(-2.3)
A 		4.4
(3)
A 		0.6
(-2.7)
A 		0.7
(-2.6)
A 		0.4
(-3)
A 		0.5
(-2.9)
A 		4
avr 0.7
(-2.1) 		1.9
(3) 		0.5
(-3) 		0.6
(-2.6) 		0.8
(-1.7) 		1
(-0.9) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189982_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28149
Sequence Type Exemplar sequence
Representative Public ID B0024.1 NCBI
Target Description B0024.1_rc /REP_DB=WormBase Gene ID /WP=CE05146 /TR=Q17417 /GB=CAA94874.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /REVCOMP /DEF=collagen
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) B0024.1
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
B0024.1 B0024.1_rc /REP_DB=WormBase Gene ID /WP=CE05146 /TR=Q17417 /GB=CAA94874.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /REVCOMP /DEF=collagen A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_073245 11/11 Negative Strand Matching Probes A 
SNAP00000027127 11/11 Negative Strand Matching Probes None
GENEFINDER00000027152 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10294374-10295393(+) 100.0 100.0
Public Domain and Genome References
Ensembl B0024.1
Sequence
Target Sequence 
>C. ELEGANS:189982_AT
cgcatgtaccggatggtcctggtggtccggccgggcatttaatacagtcttgattacgcg
gtggacaggcgggagcacgaattgtgttataattatcttgtccattgcgtcctggaattc
ctggaattcctctctgtcctggatgccctggtggtcctggtggtcctcgtggacattttg
gctttgttggctcacattggcaccaagctgggagacctgagaaagttgaacgacgttttt
ggcggaagacggagttgaatggattttcctttggctgagatggtggggagaccatgactt
gaacatcgagcatctcaacccaggcagcatcagtgtcggcgcggaacatcttcacaccat
caagaacctcgtcatgcatctcattaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCATGTACCGGATGGTCCTGGTGG 122 255 423 Antisense
TGGTCCGGCCGGGCATTTAATACAG 2 551 445 Antisense
AATACAGTCTTGATTACGCGGTGGA 689 169 463 Antisense
ATAATTATCTTGTCCATTGCGTCCT 129 27 511 Antisense
ATTGCGTCCTGGAATTCCTGGAATT 530 5 526 Antisense
GTCCTCGTGGACATTTTGGCTTTGT 116 475 585 Antisense
CTTTGTTGGCTCACATTGGCACCAA 532 221 604 Antisense
TTGGCACCAAGCTGGGAGACCTGAG 434 707 619 Antisense
GATTTTCCTTTGGCTGAGATGGTGG 564 429 684 Antisense
ATCTTCACACCATCAAGAACCTCGT 645 31 770 Antisense
AACCTCGTCATGCATCTCATTAATA 308 147 787 Antisense
Sequence Source Affymetrix Proprietary Database