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[189981_at] zinc finger protein

Description K02D7.2 /REP_DB=WormBase Gene ID /WP=CE17995 /TR=O45103 /GB=AAC02610.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 04      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 87.3
(-3)
A 		144.2
(3)
A 		126.8
(1.2)
A 		104.1
(-1.2)
A 		57
B 109.8
(3)
A 		100.9
(1.4)
A 		76.5
(-3)
A 		92.8
(-0.1)
A 		33
C 75.4
(-1.9)
A 		106.3
(-0.1)
A 		55
(-3)
A 		162.3
(3)
A 		107
avr 90.8
(-2.2) 		117.1
(2.5) 		86.1
(-3) 		119.7
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 21.3
(-3)
A 		99.4
(1.5)
A 		124.5
(3)
M 		92.8
(1.2)
A 		69.5
(-0.2)
A 		20.8
(-3)
A 		104
B 204.1
(3)
A 		115.9
(-0)
A 		97.9
(-0.6)
A 		84.1
(-1.1)
A 		105.3
(-0.4)
A 		29.4
(-3)
A 		175
C 143.6
(3)
A 		106.6
(1.3)
A 		16.7
(-2.8)
A 		15.4
(-2.8)
A 		83.4
(0.3)
A 		11.2
(-3)
A 		132
avr 123
(3) 		107.3
(2.1) 		79.7
(0.5) 		64.1
(-0.4) 		86.1
(0.8) 		20.5
(-3) 		103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 31.8
(2.5)
A 		31.3
(2.4)
A 		33.2
(3)
A 		15.2
(-3)
A 		18
B 35
(3)
A 		24.9
(-0.5)
A 		17.7
(-3)
A 		19.8
(-2.3)
A 		17
C 25
(0.1)
A 		30.6
(3)
A 		19.2
(-3)
A 		27.4
(1.3)
A 		11
avr 30.6
(3) 		28.9
(2) 		23.4
(-1.4) 		20.8
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 3.9
(-3)
A 		35.4
(3)
A 		27.1
(1.4)
M 		23.5
(0.7)
A 		21
(0.3)
A 		5.1
(-2.8)
A 		32
B 71
(3)
A 		38.6
(-0.2)
A 		23.8
(-1.7)
A 		22.3
(-1.9)
A 		42.8
(0.2)
A 		11
(-3)
A 		60
C 53.2
(3)
A 		32.5
(0.5)
A 		4.3
(-2.9)
A 		3.1
(-3)
A 		27
(-0.1)
A 		3.7
(-2.9)
A 		50
avr 42.7
(3) 		35.5
(1.8) 		18.4
(-1) 		16.3
(-1.4) 		30.3
(0.9) 		6.6
(-3) 		36
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189981_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10576
Sequence Type Exemplar sequence
Representative Public ID K02D7.2 NCBI
Target Description K02D7.2 /REP_DB=WormBase Gene ID /WP=CE17995 /TR=O45103 /GB=AAC02610.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067501
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000015236 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:311552:322584:-1 None
SNAP00000015228 ENSEMBL cdna:SNAP chromosome:CEL140:IV:311552:312025:-1 None
NM_067501 NCBI Caenorhabditis elegans K02D7.2 (K02D7.2) mRNA, complete cds. None
K02D7.2 ENSEMBL cdna:known chromosome:CEL140:IV:311552:313697:-1 gene:K02D7.2 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:311221-312025(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Ensembl K02D7.2
Entrez Gene 186874 Entrez gene
SwissProt O45103 EMBL-EBI
WormBase CE30286 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.10900.1.S1_AT similar to Zinc finger protein SLUG (Neural crest transcription factor Slug) (Snail homolog 2) cfa
DROSOPHILA_2:1641639_AT escargot dm
DROSGENOME1:143219_AT escargot dm
CHICKEN:GGA.19934.1.S1_AT similar to slug protein gga
HU35KSUBC:RC_AA410443_AT snail homolog 2 (Drosophila) hs
U133_X3P:HS.93005.0.S2_3P_AT snail homolog 2 (Drosophila) hs
HG-U133A_2:213139_AT snail homolog 2 (Drosophila) hs
HG-FOCUS:213139_AT snail homolog 2 (Drosophila) hs
HG-U133_PLUS_2:213139_AT snail homolog 2 (Drosophila) hs
HG-U133A:213139_AT snail homolog 2 (Drosophila) hs
HG-U95AV2:38288_AT snail homolog 2 (Drosophila) hs
HG-U95C:63992_AT snail homolog 2 (Drosophila) hs
MOE430A:1418673_AT snail homolog 2 (Drosophila) mm
MOUSE430A_2:1418673_AT snail homolog 2 (Drosophila) mm
MOUSE430_2:1418673_AT snail homolog 2 (Drosophila) mm
MU11KSUBA:U79550_S_AT snail homolog 2 (Drosophila) mm
MG-U74AV2:99552_AT snail homolog 2 (Drosophila) mm
MOE430B:1447643_X_AT snail homolog 2 (Drosophila) mm
MOUSE430_2:1447643_X_AT snail homolog 2 (Drosophila) mm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC02607 Defecation suppressor of clk-1 protein 4 [Caenorhabditis elegans] ref|NP_499903.3| Defecation Suppressor of Clk-1 family member (dsc-4) [Caenorhabditis elegans] gb|AAR27937.1| microsomal triglyceride transfer protein [Caenorhabditis elegans] 0.0
blast CAE67922 Hypothetical protein CBG13520 [Caenorhabditis briggsae] 0.0
blast AAC02610 Hypothetical protein K02D7.2 [Caenorhabditis elegans] ref|NP_499902.2| K02D7.2 [Caenorhabditis elegans] 1.0E-104
blast CAE67923 Hypothetical protein CBG13521 [Caenorhabditis briggsae] 4.0E-83
blast AAC02610 Hypothetical protein K02D7.2 [Caenorhabditis elegans] ref|NP_499902.2| K02D7.2 [Caenorhabditis elegans] 1.0E-65
blast AAC02610 Hypothetical protein K02D7.2 [Caenorhabditis elegans] ref|NP_499902.2| K02D7.2 [Caenorhabditis elegans] 8.0E-63
blast CAE67923 Hypothetical protein CBG13521 [Caenorhabditis briggsae] 7.0E-48
blast AAK54137 zinc finger transcription factor slug alpha [Xenopus laevis] emb|CAA56556.1| xsna [Xenopus laevis] gb|AAH54144.1| Snai2-A-prov protein [Xenopus laevis] gb|AAB34088.1| Xslu product [Xenopus laevis=African clawed frogs, stage 17 embryos, Peptide, 266 aa] gb|AAK54138.1| zinc finger transcription factor slug alpha [Xenopus laevis] sp|Q91924|SLUG_XENLA Snail protein homolog Slug (xSlu protein) 8.0E-46
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 2.4E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.4E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.8E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.4E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.8E-6
Pfam IPR007284 EMBL-EBI Protein of unknown function DUF398 9.4E-9
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.4E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.8E-6
Sequence
Target Sequence 
>C. ELEGANS:189981_AT
gcatctaaaaacacattctcttccatgcgtctgcaatgactgtgggaagtcgttttcaag
accatggctgttaaagggacatctcaggacgcatacaggttggcttattcaactcagttt
tacaaaattatattataaagtgaaaaaccttttggctgtgaattctgtgggcgttgcttt
gcggatcgatctaatttacgtgctcacctacaaactcactcaggagagaagaaacatcga
tgttcgagatgtgggcaatcatttgcacgtgtacaagtccgtcagcgtcacgaacaatgt
tgtagaggtggaggaagtggtggtgaggctgaaaaagaagatgtggaaaagtttaatgtt
tattattcaatgctacagtgtcttggaatcaaaaaatatcggcaaagccatgagatttca
tgggaagtttatggatttggcgagcatggataaaattttggcaatttttatattggtaat
agaattcgcacaaaatctctttacgagaaagctctactgtagacaacaaggtaaatatgt
aaaaataaatgacccggaccacttagcatctattcggcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATCTAAAAACACATTCTCTTCCA 152 299 15 Antisense
TCTCTTCCATGCGTCTGCAATGACT 62 613 31 Antisense
GAAGTCGTTTTCAAGACCATGGCTG 126 337 60 Antisense
GGACATCTCAGGACGCATACAGGTT 215 525 91 Antisense
TGGCTGTGAATTCTGTGGGCGTTGC 445 545 167 Antisense
GCGTTGCTTTGCGGATCGATCTAAT 439 291 185 Antisense
CGATCTAATTTACGTGCTCACCTAC 179 249 201 Antisense
GCTCACCTACAAACTCACTCAGGAG 317 301 216 Antisense
TGTACAAGTCCGTCAGCGTCACGAA 574 557 284 Antisense
ATAAATGACCCGGACCACTTAGCAT 619 19 559 Antisense
GACCACTTAGCATCTATTCGGCGAA 709 381 571 Antisense
Sequence Source Affymetrix Proprietary Database