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[189978_s_at]

Description F54D1.2_rc /REP_DB=WormBase Gene ID /WP=CE05937 /TR=Q20761 /GB=CAB00858.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=collagen
Cluster 6grp_total > 37      4grp_total > 46      6grp_cgc > 15      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 15
(3)
A 		14.5
(2.6)
A 		8.5
(-1.8)
A 		6.9
(-3)
A 		8
B 36.3
(3)
A 		7.5
(-2.9)
A 		7.1
(-3)
A 		9.7
(-2.5)
A 		29
C 7.2
(-2)
A 		8.1
(-0.7)
A 		6.5
(-3)
A 		10.6
(3)
A 		4
avr 19.5
(3) 		10
(-1.7) 		7.4
(-3) 		9.1
(-2.2) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 8.6
(2)
A 		2.9
(-3)
A 		9.7
(3)
A 		8.2
(1.7)
A 		5.2
(-1)
A 		7.1
(0.7)
A 		7
B 27.3
(3)
A 		17.3
(0.4)
A 		4.7
(-2.9)
A 		11.8
(-1)
A 		4.2
(-3)
A 		24
(2.1)
A 		23
C 19.5
(2.8)
A 		20.2
(3)
A 		7.1
(-1.5)
A 		8.4
(-1)
A 		2.7
(-3)
A 		8.8
(-0.9)
A 		18
avr 18.5
(3) 		13.5
(0.9) 		7.2
(-1.7) 		9.5
(-0.7) 		4
(-3) 		13.3
(0.8) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5.4
(3)
A 		3.2
(0)
A 		2.2
(-1.4)
A 		1
(-3)
A 		4
B 11.6
(3)
A 		1.8
(-2.9)
A 		1.6
(-3)
A 		2.1
(-2.7)
A 		10
C 2.4
(3)
A 		2.3
(2)
A 		2.3
(2)
A 		1.8
(-3)
A 		1
avr 6.5
(3) 		2.4
(-2) 		2
(-2.5) 		1.6
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.6
(0.3)
A 		1
(-3)
A 		2.1
(3)
A 		2.1
(3)
A 		1.6
(0.3)
A 		1.7
(0.8)
A 		1
B 9.5
(3)
A 		5.7
(0.3)
A 		1.1
(-3)
A 		3.1
(-1.6)
A 		1.7
(-2.6)
A 		8.9
(2.6)
A 		8
C 7.2
(3)
A 		6.2
(2)
A 		1.8
(-2.1)
A 		1.7
(-2.2)
A 		0.9
(-3)
A 		3
(-1)
A 		6
avr 6.1
(3) 		4.3
(0.7) 		1.7
(-2.6) 		2.3
(-1.9) 		1.4
(-3) 		4.5
(1) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189978_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28133
Sequence Type Exemplar sequence
Representative Public ID F54D1.2 NCBI
Target Description F54D1.2_rc /REP_DB=WormBase Gene ID /WP=CE05937 /TR=Q20761 /GB=CAB00858.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=collagen
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) F54D1.2
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F54D1.2 F54D1.2_rc /REP_DB=WormBase Gene ID /WP=CE05937 /TR=Q20761 /GB=CAB00858.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /REVCOMP /DEF=collagen A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_069714 11/11 Negative Strand Matching Probes A 
NM_069715 11/11 Negative Strand Matching Probes A 
SNAP00000005950 11/11 Negative Strand Matching Probes None
SNAP00000005951 11/11 Negative Strand Matching Probes None
GENEFINDER00000005959 11/11 Negative Strand Matching Probes None
GENEFINDER00000005960 11/11 Negative Strand Matching Probes None
F54D1.3 11/11 Negative Strand Matching Probes R A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11264923-11265854(+) 86.55 100.0
chrIV:11263377-11264308(-) 88.47 100.0
Public Domain and Genome References
Ensembl F54D1.2
Sequence
Target Sequence 
>C. ELEGANS:189978_S_AT
ccatcttgtcctgggaatcctggttgaccattgtctcctggtgctcctggagctcctggg
aatccatcgtttccacgttgtcctggagttcctggttgtccagatggtcctgctggtcct
gctggtccggatgatccagctggtccggctggtcctgctgggcacttaatgcaatcgaat
gaaacttgtgggcagttgattggagcataggtaacagtgctgtcgccccctcttggtcct
ggagctcctgggactcctggtgctcctggctggcctggtggtcctggtggtcctggtggg
caagttggcttagttggctcacactggcaccaagctggaagtccagagaaagtttgacgc
ttttgacggaagacagagttgaatggattgacacgtggcttagttggtggagtgacagta
acctgaatgtccatcatctcggtccaagcagaatcggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATCTTGTCCTGGGAATCCTGGTT 693 269 296 Antisense
GAATCCTGGTTGACCATTGTCTCCT 173 329 310 Antisense
GTTGTCCAGATGGTCCTGCTGGTCC 166 437 390 Antisense
CTGGTCCGGATGATCCAGCTGGTCC 54 241 417 Antisense
TGGTCCTGCTGGGCACTTAATGCAA 510 549 445 Antisense
GCATAGGTAACAGTGCTGTCGCCCC 392 309 500 Antisense
GTCCTGGTGGGCAAGTTGGCTTAGT 210 477 585 Antisense
AAGTTGGCTTAGTTGGCTCACACTG 635 155 597 Antisense
GCTCACACTGGCACCAAGCTGGAAG 548 301 612 Antisense
GTAACCTGAATGTCCATCATCTCGG 48 463 713 Antisense
TCATCTCGGTCCAAGCAGAATCGGT 308 619 729 Antisense
Sequence Source Affymetrix Proprietary Database