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[189977_s_at] Sugar transporter

Description ZK637.1 /REP_DB=WormBase Gene ID /WP=CE06638 /TR=SW:P30638 /GB=CAA77460.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Sugar transporter
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 54      4grp_high_8_8 > 09      6grp_highest_nonorm > 74      6grp_total > 36      4grp_total > 22      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 496
1 2 3 4 range
A 733.5
(2.8)
P 		374
(-1.8)
P 		280.2
(-3)
P 		749.4
(3)
P 		469
B 768.7
(3)
P 		354.3
(-2)
P 		272.3
(-3)
P 		712.5
(2.3)
P 		496
C 763.4
(3)
P 		283.3
(-3)
P 		285.2
(-3)
P 		703.8
(2.3)
P 		480
avr 755.2
(3) 		337.2
(-2.3) 		279.2
(-3) 		721.9
(2.6) 		476

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 536
1 2 3 4 5 6 range
A 747.1
(3)
P 		597.3
(-0.2)
P 		654.7
(1)
P 		463.4
(-3)
P 		595.8
(-0.2)
P 		614.3
(0.2)
P 		284
B 897.4
(3)
P 		814.3
(1.7)
P 		559.6
(-2.2)
P 		622.1
(-1.2)
P 		504.7
(-3)
P 		786.6
(1.3)
P 		393
C 588.3
(0.4)
P 		763.6
(3)
P 		589.2
(0.4)
P 		485.8
(-1.1)
P 		361.1
(-3)
P 		655.4
(1.4)
P 		403
avr 744.3
(3) 		725.1
(2.6) 		601.2
(-0.3) 		523.8
(-2.1) 		487.2
(-3) 		685.4
(1.6) 		257
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 204
1 2 3 4 range
A 267.1
(3)
P 		81.2
(-2.8)
P 		73.2
(-3)
P 		109.7
(-1.9)
P 		194
B 245.1
(3)
P 		87.5
(-2.2)
P 		63.1
(-3)
P 		151.8
(-0.1)
P 		182
C 252.7
(3)
P 		81.4
(-3)
P 		99.4
(-2.4)
P 		118.7
(-1.7)
P 		171
avr 255
(3) 		83.4
(-2.8) 		78.6
(-3) 		126.7
(-1.4) 		176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 137.7
(-1.7)
P 		212.4
(3)
P 		142.6
(-1.4)
P 		117.5
(-3)
P 		179.8
(0.9)
P 		149.6
(-1)
P 		95
B 312.3
(3)
P 		271.1
(1.6)
P 		135.9
(-3)
P 		164.8
(-2)
P 		205
(-0.6)
P 		293.3
(2.4)
P 		176
C 218.1
(2.3)
P 		233
(3)
P 		150
(-0.7)
P 		97.7
(-3)
P 		116.9
(-2.1)
P 		219.4
(2.4)
P 		135
avr 222.7
(2.1) 		238.8
(3) 		142.8
(-2.1) 		126.7
(-3) 		167.2
(-0.8) 		220.8
(2) 		112
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189977_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6104
Sequence Type Exemplar sequence
Representative Public ID ZK637.1 NCBI
Target Description ZK637.1 /REP_DB=WormBase Gene ID /WP=CE06638 /TR=SW:P30638 /GB=CAA77460.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Sugar transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066559(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066559 NCBI Caenorhabditis elegans ZK637.1 (ZK637.1) mRNA, complete cds. 11/11 A 
ZK637.1.1 ENSEMBL cdna:known chromosome:CEL140:III:8882861:8885387:-1 gene:ZK637.1 11/11 None
ZK637.1.2 ENSEMBL cdna:known chromosome:CEL140:III:8882877:8885385:-1 gene:ZK637.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8882911-8885372(-) 100.0 100.0
Public Domain and Genome References
Gene Title Sugar transporter
Ensembl ZK637.1
Entrez Gene 176250 Entrez gene
SwissProt P30638 EMBL-EBI
WormBase CE32291 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:257861_AT transporter-related at
CANINE_2:CFAAFFX.17444.1.S1_AT similar to SV2 related protein cfa
DROSOPHILA_2:1633630_AT dm
DROSGENOME1:147829_AT dm
CHICKEN:GGAAFFX.3098.1.S1_AT similar to hypothetical protein DKFZp761H039 gga
CHICKEN:GGAAFFX.3098.2.S1_AT similar to hypothetical protein DKFZp761H039 gga
HG-U133_PLUS_2:229818_AT SV2 related protein hs
HG-U133B:229818_AT SV2 related protein hs
HU35KSUBA:RC_AA350030_AT SV2 related protein hs
U133_X3P:HS.4221.0.S1_3P_AT SV2 related protein hs
HG-U95B:53530_AT SV2 related protein hs
MG-U74BV2:112505_AT RIKEN cDNA 1110030H18 gene mm
MOE430A:1452663_AT RIKEN cDNA 1110030H18 gene mm
MOUSE430A_2:1452663_AT RIKEN cDNA 1110030H18 gene mm
MOUSE430_2:1452663_AT RIKEN cDNA 1110030H18 gene mm
RN-U34:AF060173_AT SV2 related protein rn
RG-U34A:AF060173_AT SV2 related protein rn
RAE230A:1369022_AT SV2 related protein rn
RAT230_2:1369022_AT SV2 related protein rn
RAE230A:1388845_AT SV2 related protein rn
RAT230_2:1388845_AT SV2 related protein rn
RG-U34C:RC_AI144958_AT SV2 related protein rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
6811 ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
15075 ion transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA77460 Hypothetical protein ZK637.1 [Caenorhabditis elegans] emb|CAA80131.2| Hypothetical protein ZK637.1 [Caenorhabditis elegans] ref|NP_498960.2| ZK637.1 [Caenorhabditis elegans] sp|P30638|YOU1_CAEEL Hypothetical protein ZK637.1 in chromosome III 0.0
blast CAE57609 Hypothetical protein CBG00590 [Caenorhabditis briggsae] 0.0
blast S15786 glucose transport protein homolog - Caenorhabditis elegans (fragment) 1.0E-168
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 1.6E-100
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498960.2 10 151-170,175-197,209-231,235-257,322-344,375-397,402-419,423-445,458-480,490-509
ZK637.1.1 10 151-170,175-197,209-231,235-257,322-344,375-397,402-419,423-445,458-480,490-509
ZK637.1.2 10 151-170,175-197,209-231,235-257,322-344,375-397,402-419,423-445,458-480,490-509
Sequence
Target Sequence 
>C. ELEGANS:189977_S_AT
tttgcttggatcgtttcactgtcactgtgctcatttttgtggcacgtgccttcatttctg
gtgccttccaatgtgcatacgtctacacaccggaagtttatcctacaacattgagagccg
ttggactgggaacgtgctctgcgatggcaagaattggagcaattgttgcgtcggagaaat
ctctatccttacctataggaatttatggaactgcggcaatacttggattgatagcttctc
taagtttaccaatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGCTTGGATCGTTTCACTGTCAC 501 667 1265 Antisense
TTCACTGTCACTGTGCTCATTTTTG 498 687 1279 Antisense
TGCTCATTTTTGTGGCACGTGCCTT 395 577 1292 Antisense
GGCACGTGCCTTCATTTCTGGTGCC 406 535 1305 Antisense
TTTCTGGTGCCTTCCAATGTGCATA 110 671 1319 Antisense
CATACGTCTACACACCGGAAGTTTA 35 215 1340 Antisense
GAGCCGTTGGACTGGGAACGTGCTC 323 381 1379 Antisense
GAACGTGCTCTGCGATGGCAAGAAT 4 349 1394 Antisense
GGAGAAATCTCTATCCTTACCTATA 21 519 1437 Antisense
GGAACTGCGGCAATACTTGGATTGA 72 531 1471 Antisense
GATAGCTTCTCTAAGTTTACCAATT 259 425 1494 Antisense
Sequence Source Affymetrix Proprietary Database