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[189976_at] Sugar transporter

Description ZK637.1 /REP_DB=WormBase Gene ID /WP=CE06638 /TR=SW:P30638 /GB=CAA77460.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Sugar transporter
Cluster 6grp_highest_10_10 > 64      6grp_high1_10_10 > 46      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 73      6grp_total > 46      4grp_total > 31      6grp_highest_sub > Cu      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 378
1 2 3 4 range
A 558.7
(3)
P 		273.3
(-1.5)
P 		180.6
(-3)
P 		355.6
(-0.2)
P 		378
B 532.5
(3)
P 		233.6
(-2.6)
P 		212.4
(-3)
P 		318.6
(-1)
P 		320
C 552.7
(3)
P 		262.4
(-2.7)
P 		249.3
(-3)
P 		518.6
(2.3)
P 		303
avr 548
(3) 		256.4
(-2.2) 		214.1
(-3) 		397.6
(0.3) 		334

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 338
1 2 3 4 5 6 range
A 518
(2.8)
P 		394.9
(-2.8)
P 		522.3
(3)
P 		390.8
(-3)
P 		456.5
(-0)
P 		488.5
(1.5)
P 		132
B 666.5
(3)
P 		596.8
(1.5)
P 		475
(-1.2)
P 		508.2
(-0.5)
P 		395.1
(-3)
P 		555.4
(0.5)
P 		271
C 477.5
(0.8)
P 		541.1
(2.4)
P 		429.8
(-0.4)
P 		565.1
(3)
P 		328.4
(-3)
P 		563.3
(3)
P 		237
avr 554
(3) 		510.9
(1.4) 		475.7
(0.1) 		488
(0.5) 		393.3
(-3) 		535.7
(2.3) 		161
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 203.4
(3)
P 		59.3
(-2.5)
P 		47.2
(-3)
P 		52.1
(-2.8)
P 		156
B 169.8
(3)
P 		57.7
(-2.6)
P 		49.2
(-3)
P 		67.9
(-2.1)
P 		121
C 182.9
(3)
P 		75.4
(-3)
P 		86.9
(-2.4)
P 		87.5
(-2.3)
P 		108
avr 185.4
(3) 		64.1
(-2.9) 		61.1
(-3) 		69.2
(-2.6) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 95.5
(-3)
P 		140.4
(3)
P 		113.7
(-0.6)
P 		99.1
(-2.5)
P 		137.8
(2.7)
P 		118.9
(0.1)
P 		45
B 231.9
(3)
P 		198.7
(1.3)
P 		115.3
(-3)
P 		134.6
(-2)
P 		160.5
(-0.7)
P 		207.1
(1.7)
P 		117
C 177
(2.2)
P 		165.1
(1.3)
P 		109.4
(-2.8)
P 		113.6
(-2.5)
P 		106.3
(-3)
P 		188.6
(3)
P 		82
avr 168.1
(2.7) 		168.1
(2.7) 		112.8
(-3) 		115.8
(-2.7) 		134.9
(-0.7) 		171.5
(3) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189976_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6104
Sequence Type Exemplar sequence
Representative Public ID ZK637.1 NCBI
Target Description ZK637.1 /REP_DB=WormBase Gene ID /WP=CE06638 /TR=SW:P30638 /GB=CAA77460.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=Sugar transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066559(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066559 NCBI Caenorhabditis elegans ZK637.1 (ZK637.1) mRNA, complete cds. 11/11 A 
ZK637.1.1 ENSEMBL cdna:known chromosome:CEL140:III:8882861:8885387:-1 gene:ZK637.1 11/11 None
ZK637.1.2 ENSEMBL cdna:known chromosome:CEL140:III:8882877:8885385:-1 gene:ZK637.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8882911-8885372(-) 100.0 100.0
Public Domain and Genome References
Gene Title Sugar transporter
Ensembl ZK637.1
Entrez Gene 176250 Entrez gene
SwissProt P30638 EMBL-EBI
WormBase CE32291 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:257861_AT transporter-related at
CANINE_2:CFAAFFX.17444.1.S1_AT similar to SV2 related protein cfa
DROSOPHILA_2:1633630_AT dm
DROSGENOME1:147829_AT dm
CHICKEN:GGAAFFX.3098.1.S1_AT similar to hypothetical protein DKFZp761H039 gga
CHICKEN:GGAAFFX.3098.2.S1_AT similar to hypothetical protein DKFZp761H039 gga
HG-U133_PLUS_2:229818_AT SV2 related protein hs
HG-U133B:229818_AT SV2 related protein hs
HU35KSUBA:RC_AA350030_AT SV2 related protein hs
U133_X3P:HS.4221.0.S1_3P_AT SV2 related protein hs
HG-U95B:53530_AT SV2 related protein hs
MG-U74BV2:112505_AT RIKEN cDNA 1110030H18 gene mm
MOE430A:1452663_AT RIKEN cDNA 1110030H18 gene mm
MOUSE430A_2:1452663_AT RIKEN cDNA 1110030H18 gene mm
MOUSE430_2:1452663_AT RIKEN cDNA 1110030H18 gene mm
RN-U34:AF060173_AT SV2 related protein rn
RG-U34A:AF060173_AT SV2 related protein rn
RAE230A:1369022_AT SV2 related protein rn
RAT230_2:1369022_AT SV2 related protein rn
RAE230A:1388845_AT SV2 related protein rn
RAT230_2:1388845_AT SV2 related protein rn
RG-U34C:RC_AI144958_AT SV2 related protein rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
6811 ion transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
15075 ion transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA77460 Hypothetical protein ZK637.1 [Caenorhabditis elegans] emb|CAA80131.2| Hypothetical protein ZK637.1 [Caenorhabditis elegans] ref|NP_498960.2| ZK637.1 [Caenorhabditis elegans] sp|P30638|YOU1_CAEEL Hypothetical protein ZK637.1 in chromosome III 0.0
blast CAE57609 Hypothetical protein CBG00590 [Caenorhabditis briggsae] 0.0
blast S15786 glucose transport protein homolog - Caenorhabditis elegans (fragment) 1.0E-168
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 1.6E-100
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498960.2 10 151-170,175-197,209-231,235-257,322-344,375-397,402-419,423-445,458-480,490-509
ZK637.1.1 10 151-170,175-197,209-231,235-257,322-344,375-397,402-419,423-445,458-480,490-509
ZK637.1.2 10 151-170,175-197,209-231,235-257,322-344,375-397,402-419,423-445,458-480,490-509
Sequence
Target Sequence 
>C. ELEGANS:189976_AT
gcatttgggctattaccgcattctcgtactacggtatggttctcttcacaacagttttgt
ttcaatcacacgatgaatgtcatggtggattgttctctaatggaactcaaatggaagtat
gccaaccattgacaagatctgattattttgatttattatcaactacacttgccgaattcc
ctggattgataatcactgtattgataattgaatggtttggaagaaagaagacaatggcat
tggaatatgcagtttttgcaattttcactttcttgttatacttttgcttggatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATTTGGGCTATTACCGCATTCTC 569 307 983 Antisense
CTATTACCGCATTCTCGTACTACGG 120 225 992 Antisense
GCATTCTCGTACTACGGTATGGTTC 193 307 1000 Antisense
GGTATGGTTCTCTTCACAACAGTTT 313 505 1015 Antisense
AACAGTTTTGTTTCAATCACACGAT 295 137 1032 Antisense
ATGTCATGGTGGATTGTTCTCTAAT 89 49 1059 Antisense
GTATGCCAACCATTGACAAGATCTG 584 455 1099 Antisense
TATCAACTACACTTGCCGAATTCCC 468 659 1139 Antisense
CACTTGCCGAATTCCCTGGATTGAT 299 197 1148 Antisense
TTTGCAATTTTCACTTTCTTGTTAT 600 667 1237 Antisense
TCTTGTTATACTTTTGCTTGGATCG 367 617 1253 Antisense
Sequence Source Affymetrix Proprietary Database