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[189975_at] C-type lectin domain

Description F08H9.5 /REP_DB=WormBase Gene ID /WP=CE09269 /TR=Q19231 /GB=CAB01149.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=C-type lectin domain
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 32      6grp_highest_nonorm > 43      6grp_total > 31      4grp_total > 61      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 834
1 2 3 4 range
A 793.2
(3)
P 		605.2
(1.5)
P 		522.9
(0.8)
P 		61.2
(-3)
A 		732
B 845.8
(3)
P 		617.8
(1.4)
P 		500.1
(0.5)
P 		11.4
(-3)
A 		834
C 791.5
(3)
P 		559.6
(1)
P 		576.9
(1.2)
P 		88.3
(-3)
A 		703
avr 810.2
(3) 		594.2
(1.3) 		533.3
(0.8) 		53.6
(-3) 		757

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1433
1 2 3 4 5 6 range
A 917.2
(1.2)
P 		1091.9
(2.2)
P 		1214
(3)
P 		1046.2
(2)
P 		1118.1
(2.4)
P 		246.1
(-3)
P 		968
B 1020.3
(0.2)
P 		1344
(1.6)
P 		1679
(3)
P 		1016.1
(0.2)
P 		1079.5
(0.4)
P 		276.9
(-3)
P 		1402
C 896.3
(-0.1)
P 		1556.8
(3)
P 		1187.1
(1.3)
P 		1448
(2.5)
P 		785.6
(-0.6)
P 		265.5
(-3)
P 		1291
avr 944.6
(0.7) 		1330.9
(2.8) 		1360
(3) 		1170.1
(2) 		994.4
(1) 		262.8
(-3) 		1097
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 286
1 2 3 4 range
A 288.8
(3)
P 		131.4
(-0.4)
P 		136.7
(-0.3)
P 		9
(-3)
A 		280
B 269.7
(3)
P 		152.6
(0.4)
P 		115.9
(-0.5)
P 		2.4
(-3)
A 		267
C 262
(3)
P 		160.9
(0.5)
P 		201.1
(1.5)
P 		14.9
(-3)
A 		247
avr 273.5
(3) 		148.3
(0.2) 		151.2
(0.2) 		8.8
(-3) 		265

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 415
1 2 3 4 5 6 range
A 169.1
(-1)
P 		388.3
(3)
P 		264.4
(0.7)
P 		265.3
(0.8)
P 		337.4
(2.1)
P 		59.9
(-3)
P 		328
B 355
(1.4)
P 		447.4
(3)
P 		407.7
(2.3)
P 		269.1
(-0.1)
P 		438.6
(2.8)
P 		103.3
(-3)
P 		344
C 332.2
(0.8)
P 		475
(3)
P 		302.1
(0.3)
P 		291.2
(0.1)
P 		254.2
(-0.4)
P 		88.9
(-3)
P 		386
avr 285.4
(0.4) 		436.9
(3) 		324.7
(1.1) 		275.2
(0.3) 		343.4
(1.4) 		84
(-3) 		353
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189975_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13894
Sequence Type Exemplar sequence
Representative Public ID F08H9.5 NCBI
Target Description F08H9.5 /REP_DB=WormBase Gene ID /WP=CE09269 /TR=Q19231 /GB=CAB01149.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=C-type lectin domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074187(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074187 NCBI Caenorhabditis elegans F08H9.5 (F08H9.5) mRNA, complete cds. 11/11 None
GENEFINDER00000029737 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14475138:14476942:1 11/11 None
F08H9.5 ENSEMBL cdna:known chromosome:CEL140:V:14475138:14476774:1 gene:F08H9.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029733 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14475137-14476774(+) 100.0 100.0
Public Domain and Genome References
Gene Title C-type lectin domain
Ensembl F08H9.5
Entrez Gene 184216 Entrez gene
SwissProt Q19231 EMBL-EBI
WormBase CE09269 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB01149 Hypothetical protein F08H9.5 [Caenorhabditis elegans] ref|NP_506588.1| F08H9.5 [Caenorhabditis elegans] 0.0
blast CAE60888 Hypothetical protein CBG04603 [Caenorhabditis briggsae] 1.0E-171
blast CAB01151 Hypothetical protein F08H9.7 [Caenorhabditis elegans] ref|NP_506589.2| C-type LECtin family member (clec-56) [Caenorhabditis elegans] 1.0E-162
blast CAE60888 Hypothetical protein CBG04603 [Caenorhabditis briggsae] 1.0E-152
blast CAB01151 Hypothetical protein F08H9.7 [Caenorhabditis elegans] ref|NP_506589.2| C-type LECtin family member (clec-56) [Caenorhabditis elegans] 1.0E-142
Protein Domains
Database ID Description E-Value
Pfam IPR000859 EMBL-EBI CUB 2.4E-10
Pfam IPR000859 EMBL-EBI CUB 1.1E-13
Pfam IPR000859 EMBL-EBI CUB 8.9E-20
Sequence
Target Sequence 
>C. ELEGANS:189975_AT
acagtatccagccagcattatgcagacaaatgccagcattgtgtcctagtcaaacatcct
atggaggtcaatacactggatcaggaactatcacttcgccaggttatccgaatcaatatt
ataacaatttggattgtgtgtacacaattttatcacctaataatacttacattacaatgc
aattctccccatatatggttgaagaatattttgattggattgatttgtttgatggtccga
atacaacatatccgtttcttggaacaactgacgattggtggtctctccgtttcaactttg
aaagttccagtaacgctgtcagttttatattccatactgatagtattgtgactgacaaag
gatggcttttgacttggagtgcaaaaacaaaaactccaccaattagccaatctggtcaaa
atggatccttcacatcacctaattatccgaacaattatgacccgtacactgagcaaattt
attatgtgaatgctccaactggattccaagtcaacttgacaatacctgattttgtgacag
aggcgaattatgatgtgctggaaatttataatacatctactgtaatttcgtcggggctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAGTATCCAGCCAGCATTATGCAG 505 97 428 Antisense
AATGCCAGCATTGTGTCCTAGTCAA 169 167 456 Antisense
ATCACTTCGCCAGGTTATCCGAATC 654 27 517 Antisense
ATTACAATGCAATTCTCCCCATATA 678 11 598 Antisense
AACTGACGATTGGTGGTCTCTCCGT 701 141 693 Antisense
TGGTCTCTCCGTTTCAACTTTGAAA 454 551 706 Antisense
ACGCTGTCAGTTTTATATTCCATAC 431 91 740 Antisense
ACTCCACCAATTAGCCAATCTGGTC 298 99 820 Antisense
AATGGATCCTTCACATCACCTAATT 318 163 847 Antisense
AATTATGACCCGTACACTGAGCAAA 428 173 880 Antisense
ATCTACTGTAATTTCGTCGGGGCTT 584 29 1002 Antisense
Sequence Source Affymetrix Proprietary Database