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[189970_s_at] phosphoprotein 1R20

Description F52D2.2 /REP_DB=WormBase Gene ID /WP=CE04623 /TR=Q9TXM8 /GB=AAC78153.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=phosphoprotein 1R20
Cluster 6grp_total > 78      4grp_total > 26      6grp_cgc > 49      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 101.7
(2.3)
A 		68.8
(-1.3)
A 		52.5
(-3)
A 		108.4
(3)
M 		56
B 4.1
(-3)
A 		99
(3)
A 		56.9
(0.3)
A 		44.6
(-0.4)
A 		95
C 8.9
(-3)
A 		88.5
(1.8)
A 		35
(-1.4)
A 		109.1
(3)
A 		100
avr 38.2
(-3) 		85.4
(2.8) 		48.1
(-1.8) 		87.4
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 250
1 2 3 4 5 6 range
A 76.6
(-2.5)
A 		71.1
(-2.6)
P 		89.1
(-2.1)
P 		57.1
(-3)
A 		128.1
(-1.1)
P 		281.1
(3)
P 		224
B 83.6
(-1.3)
A 		67
(-1.9)
P 		82.5
(-1.4)
A 		31.1
(-3)
A 		113.4
(-0.4)
P 		220
(3)
P 		189
C 42.2
(-3)
A 		99.5
(-1.5)
P 		61.3
(-2.5)
A 		78.3
(-2)
A 		122
(-0.9)
P 		267.9
(3)
P 		226
avr 67.5
(-2.6) 		79.2
(-2.3) 		77.6
(-2.3) 		55.5
(-3) 		121.2
(-1) 		256.3
(3) 		201
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 37
(3)
A 		14.9
(-2.7)
A 		13.7
(-3)
A 		15.9
(-2.4)
M 		23
B 1.3
(-3)
A 		24.4
(3)
A 		13.2
(0.1)
A 		9.5
(-0.9)
A 		23
C 2.9
(-3)
A 		25.4
(3)
A 		12.2
(-0.5)
A 		18.4
(1.1)
A 		23
avr 13.7
(-2.5) 		21.6
(3) 		13
(-3) 		14.6
(-1.9) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 14.1
(-3)
A 		25.3
(-1.8)
P 		19.4
(-2.4)
P 		14.5
(-3)
A 		38.6
(-0.3)
P 		68.4
(3)
P 		54
B 29.1
(-1.3)
A 		22.3
(-1.9)
P 		20
(-2)
A 		8.3
(-3)
A 		46.1
(0.1)
P 		82
(3)
P 		74
C 15.6
(-3)
A 		30.4
(-1.8)
P 		15.6
(-3)
A 		15.7
(-3)
A 		39.5
(-1.1)
P 		89.7
(3)
P 		74
avr 19.6
(-2.4) 		26
(-1.8) 		18.3
(-2.5) 		12.8
(-3) 		41.4
(-0.4) 		80
(3) 		67
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189970_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18097
Sequence Type Exemplar sequence
Representative Public ID F52D2.2 NCBI
Target Description F52D2.2 /REP_DB=WormBase Gene ID /WP=CE04623 /TR=Q9TXM8 /GB=AAC78153.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=phosphoprotein 1R20
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075955(11), NM_075958(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075955 NCBI Caenorhabditis elegans Regulator of G protein Signaling family member (rgs-8.2) (rgs-8.2) mRNA, complete cds. 11/11 None
NM_075958 NCBI Caenorhabditis elegans Regulator of G protein Signaling family member (rgs-8.1) (rgs-8.1) mRNA, complete cds. 11/11 None
SNAP00000016853 ENSEMBL cdna:SNAP chromosome:CEL140:X:1952473:1953554:-1 11/11 None
GENEFINDER00000016861 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1952473:1953554:-1 11/11 None
SNAP00000009494 ENSEMBL cdna:SNAP chromosome:CEL140:X:1943944:1945025:-1 11/11 None
GENEFINDER00000009496 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1943944:1945025:-1 11/11 None
Y59E1A.2 ENSEMBL cdna:known chromosome:CEL140:X:1943944:1945025:-1 gene:Y59E1A.2 11/11 None
F52D2.2 ENSEMBL cdna:known chromosome:CEL140:X:1952473:1953554:-1 gene:F52D2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1943943-1945025(-) 100.0 100.0
chrX:1952472-1953554(-) 100.0 100.0
Public Domain and Genome References
Gene Title phosphoprotein 1R20

Gene Symbol rgs-8.1
rgs-8.2
Ensembl Y59E1A.2
F52D2.2
Entrez Gene 180507 Entrez gene
190409 Entrez gene
SwissProt Q9TXM8 EMBL-EBI
WormBase CE04623 Wormbase
CE04623 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
4871 signal transducer activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39348 Regulator of g protein signaling protein 8.2 [Caenorhabditis elegans] gb|AAC78153.1| Regulator of g protein signaling protein 8.1 [Caenorhabditis elegans] ref|NP_508356.1| Regulator of G protein Signaling family member (rgs-8.2) [Caenorhabditis elegans] ref|NP_508359.1| Regulator of G protein Signaling family member (rgs-8.1) [Caenorhabditis elegans] 1.0E-122
blast AAB52620 Regulator of g protein signaling protein 9 [Caenorhabditis elegans] ref|NP_508350.1| Regulator of G protein Signaling family member (rgs-9) [Caenorhabditis elegans] 5.0E-57
Sequence
Target Sequence 
>C. ELEGANS:189970_S_AT
tggaatcgacagtttcccgatcaccgcgttgtcgaggaaaatggtccgatcaaaacgaag
gatgcgttgatgattttgtattttatcacagtgagaaatatcaggaaaaaccgaaataca
ataactcgtatcagggatgcactgaaatcaccggtttcaattttccgccgctctccaaaa
ctctcacttcaagaggatgtgctcagttggcagaaatcgccggaatctcttgccgccagc
gaatacggcagtaaacttttcgttcaatttctgaaacaacagacgtcggctgatgatgtc
gatttttggctggcatgcgctaaacatcggtggacagaaatgacacgggatggatacgaa
tacgcagcttatatgatttacaatacttatgtgttctggacgtgtgaaagaaagatagat
ctacttgataaattttgctttgtggacgacgacggtggcaccccgagagatgtgttcatc
actgctcaggcatatgttgggaccaaatttccaaaggattcgcacaagaaattcctccaa
gatcccatctacttgaacttcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAATCGACAGTTTCCCGATCACC 343 547 100 Antisense
CCGATCACCGCGTTGTCGAGGAAAA 33 265 116 Antisense
GCAGAAATCGCCGGAATCTCTTGCC 501 311 309 Antisense
AGACGTCGGCTGATGATGTCGATTT 498 71 380 Antisense
TGTCGATTTTTGGCTGGCATGCGCT 559 557 396 Antisense
GGCATGCGCTAAACATCGGTGGACA 622 535 411 Antisense
GCTTTGTGGACGACGACGGTGGCAC 658 303 536 Antisense
GTGGCACCCCGAGAGATGTGTTCAT 514 491 554 Antisense
ATGTGTTCATCACTGCTCAGGCATA 651 49 569 Antisense
CAAGAAATTCCTCCAAGATCCCATC 124 185 624 Antisense
AAGATCCCATCTACTTGAACTTCCT 600 155 638 Antisense
Sequence Source Affymetrix Proprietary Database