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[189969_at] 7TM chemoreceptor, sra family

Description T26E3.9 /REP_DB=WormBase Gene ID /WP=CE14200 /TR=O17847 /GB=CAB04839.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=7tm receptor protein
Cluster 6grp_total > 18      4grp_total > 19      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 3.7
(-3)
A 		3.9
(-2.9)
A 		4.6
(-2.6)
A 		18.1
(3)
A 		14
B 10.5
(-2.6)
A 		8.5
(-2.8)
A 		6.2
(-3)
A 		66.9
(3)
A 		61
C 4.7
(-3)
A 		41.3
(3)
A 		7.5
(-2.5)
A 		33.6
(1.7)
A 		37
avr 6.3
(-3) 		17.9
(-0.9) 		6.1
(-3) 		39.5
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 64.1
(3)
A 		2.5
(-3)
A 		6.3
(-2.6)
A 		7.4
(-2.5)
A 		10
(-2.3)
A 		11.7
(-2.1)
A 		62
B 6.8
(-1.7)
A 		17.6
(3)
A 		17.4
(2.9)
A 		8.3
(-1.1)
A 		5.4
(-2.3)
A 		3.9
(-3)
A 		14
C 6.2
(-2.8)
A 		8.6
(2)
A 		8
(0.8)
A 		9.1
(3)
A 		6.1
(-3)
A 		7.1
(-1)
A 		3
avr 25.7
(3) 		9.6
(-2.2) 		10.6
(-1.9) 		8.3
(-2.6) 		7.2
(-3) 		7.6
(-2.9) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 1.3
(-1.4)
A 		0.8
(-3)
A 		1.2
(-1.7)
A 		2.7
(3)
A 		2
B 3.4
(-2.1)
A 		2.1
(-2.7)
A 		1.4
(-3)
A 		14.3
(3)
A 		13
C 1.6
(-3)
A 		11.9
(3)
A 		2.6
(-2.4)
A 		5.7
(-0.6)
A 		10
avr 2.1
(-2.6) 		4.9
(0.3) 		1.7
(-3) 		7.6
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 11.8
(3)
A 		0.9
(-3)
A 		1.4
(-2.7)
A 		1.9
(-2.4)
A 		3
(-1.8)
A 		2.8
(-2)
A 		11
B 2.3
(-1.9)
A 		5.9
(3)
A 		4.2
(0.7)
A 		2.2
(-2)
A 		2.2
(-2)
A 		1.5
(-3)
A 		4
C 2.3
(0.7)
A 		2.6
(3)
A 		2
(-1.5)
A 		1.8
(-3)
A 		2
(-1.5)
A 		2.4
(1.5)
A 		1
avr 5.5
(3) 		3.1
(-1.1) 		2.5
(-2.1) 		2
(-3) 		2.4
(-2.3) 		2.2
(-2.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189969_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.485
Sequence Type Exemplar sequence
Representative Public ID T26E3.9 NCBI
Target Description T26E3.9 /REP_DB=WormBase Gene ID /WP=CE14200 /TR=O17847 /GB=CAB04839.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=7tm receptor protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060810(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060810 NCBI Caenorhabditis elegans Serpentine Receptor, class A (alpha) family member (sra-25) (sra-25) mRNA, complete cds. 11/11 None
T26E3.9 ENSEMBL cdna:known chromosome:CEL140:I:12694237:12696327:1 gene:T26E3.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000034757 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12694167-12696258(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sra family
Gene Symbol sra-25
Ensembl T26E3.9
Entrez Gene 188926 Entrez gene
SwissProt O17847 EMBL-EBI
WormBase CE33461 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07603 Hypothetical protein T26E3.9 [Caenorhabditis elegans] emb|CAB04839.2| Hypothetical protein T26E3.9 [Caenorhabditis elegans] ref|NP_493211.2| Serpentine Receptor, class A (alpha) family member (sra-25) [Caenorhabditis elegans] sp|O17847|SRA25_CAEEL Serpentine receptor class alpha-25 (Protein sra-25) 1.0E-174
blast CAB07598 Hypothetical protein F28C12.1 [Caenorhabditis elegans] ref|NP_493212.2| Serpentine Receptor, class A (alpha) family member (sra-17) [Caenorhabditis elegans] sp|O17842|SRA17_CAEEL Serpentine receptor class alpha-17 (Protein sra-17) 1.0E-139
blast CAB04702 Hypothetical protein T06G6.2 [Caenorhabditis elegans] ref|NP_493220.2| Serpentine Receptor, class A (alpha) family member (sra-24) [Caenorhabditis elegans] sp|O62368|SRA24_CAEEL Serpentine receptor class alpha-24 (Protein sra-24) 1.0E-122
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493211.2 5 28-50,145-167,198-215,243-265,280-302
T26E3.9 5 28-50,145-167,198-215,243-265,280-302
Sequence
Target Sequence 
>C. ELEGANS:189969_AT
caggttctacttctcacagcaaaactttgtttcaaataccctcctaatcatccaatgcct
tctctcattcggcacgtattatgtcggattatatggagtcccgccatttggctacgtatc
aatttgctactatactccgaaatacgcggttaattttctcaaaatcaatgatttccgcac
ggtagtcatggttttctgcataatagttattatattcgtctactatctcagcgtgaggtc
cgagaagcaaatccaacgaacgagttattctcctggagagcgatactgggcatatgagaa
tgtggagacttctcaatcagtatgcatattgattgttctccagtttgcgtgtattctaat
gtcgtcgtatggtgtaaactatattcgatcgaaggaaagcatgatgtcagaagaagattt
tcatacacttgctccgttttttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGGTTCTACTTCTCACAGCAAAAC 151 209 471 Antisense
TTTGTTTCAAATACCCTCCTAATCA 352 667 496 Antisense
CTTCTCTCATTCGGCACGTATTATG 253 221 529 Antisense
GTCCCGCCATTTGGCTACGTATCAA 513 475 568 Antisense
TTGCTACTATACTCCGAAATACGCG 89 701 594 Antisense
TCCGCACGGTAGTCATGGTTTTCTG 113 597 644 Antisense
TTATATTCGTCTACTATCTCAGCGT 182 679 680 Antisense
GAGGTCCGAGAAGCAAATCCAACGA 252 401 705 Antisense
TGTTCTCCAGTTTGCGTGTATTCTA 264 563 804 Antisense
GTGTATTCTAATGTCGTCGTATGGT 160 487 819 Antisense
TTCATACACTTGCTCCGTTTTTTGC 632 679 890 Antisense
Sequence Source Affymetrix Proprietary Database