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[189967_at] zinc finger protein

Description C06G3.6 /REP_DB=WormBase Gene ID /WP=CE07982 /TR=Q17746 /GB=AAB03135.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 20      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 42      6grp_total > 40      4grp_total > 22      6grp_highest_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 459
1 2 3 4 range
A 758.7
(2.5)
P 		470
(-1.3)
P 		337.5
(-3)
P 		796
(3)
P 		459
B 748.2
(3)
P 		377.9
(-3)
P 		403.9
(-2.6)
P 		677.6
(1.9)
P 		370
C 653.5
(3)
P 		445.2
(-3)
P 		470.6
(-2.3)
P 		643.7
(2.7)
P 		208
avr 720.1
(3) 		431
(-2.5) 		404
(-3) 		705.8
(2.7) 		316

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 594
1 2 3 4 5 6 range
A 733.6
(-2.5)
P 		820.2
(-1.3)
P 		1128.4
(3)
P 		922.2
(0.1)
P 		695.7
(-3)
P 		737
(-2.4)
P 		433
B 1105.8
(2.3)
P 		901.8
(0.1)
P 		1166.7
(3)
P 		928.1
(0.4)
P 		631.4
(-2.8)
P 		611.6
(-3)
P 		555
C 1116.6
(2.1)
P 		1022
(1.1)
P 		1041.8
(1.3)
P 		1205.9
(3)
P 		618.7
(-3)
P 		797.3
(-1.2)
P 		587
avr 985.3
(1.4) 		914.7
(0.4) 		1112.3
(3) 		1018.7
(1.8) 		648.6
(-3) 		715.3
(-2.1) 		464
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 276.2
(3)
P 		102
(-2.6)
P 		88.2
(-3)
P 		116.5
(-2.1)
P 		188
B 238.6
(3)
P 		93.3
(-3)
P 		93.6
(-3)
P 		144.4
(-0.9)
P 		145
C 216.3
(3)
P 		128
(-1.9)
P 		164
(0.1)
P 		108.5
(-3)
P 		108
avr 243.7
(3) 		107.8
(-3) 		115.3
(-2.7) 		123.1
(-2.3) 		136

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 279
1 2 3 4 5 6 range
A 135.2
(-3)
P 		291.7
(3)
P 		245.7
(1.2)
P 		233.9
(0.8)
P 		209.9
(-0.1)
P 		179.4
(-1.3)
P 		157
B 384.7
(3)
P 		300.2
(-0.2)
P 		283.3
(-0.9)
P 		245.8
(-2.3)
P 		256.5
(-1.9)
P 		228.1
(-3)
P 		157
C 413.9
(3)
P 		311.8
(0.1)
P 		265.2
(-1.2)
P 		242.5
(-1.8)
P 		200.2
(-3)
P 		266.9
(-1.1)
P 		214
avr 311.3
(3) 		301.2
(2.3) 		264.7
(-0.1) 		240.7
(-1.8) 		222.2
(-3) 		224.8
(-2.8) 		89
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189967_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8948
Sequence Type Exemplar sequence
Representative Public ID C06G3.6 NCBI
Target Description C06G3.6 /REP_DB=WormBase Gene ID /WP=CE07982 /TR=Q17746 /GB=AAB03135.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068685(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068685 NCBI Caenorhabditis elegans C06G3.6 (C06G3.6) mRNA, complete cds. 11/11 None
SNAP00000008735 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7017649:7019804:1 11/11 None
GENEFINDER00000008753 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7017649:7019804:1 11/11 None
C06G3.6 ENSEMBL cdna:known chromosome:CEL140:IV:7017610:7020186:1 gene:C06G3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7017654-7019810(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Ensembl C06G3.6
Entrez Gene 177467 Entrez gene
WormBase CE07982 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB03135 Hypothetical protein C06G3.6 [Caenorhabditis elegans] ref|NP_501086.1| C06G3.6 [Caenorhabditis elegans] 0.0
blast CAE61786 Hypothetical protein CBG05748 [Caenorhabditis briggsae] 6.0E-57
blast CAA92982 Hypothetical protein T12G3.1 [Caenorhabditis elegans] ref|NP_502280.2| T12G3.1 [Caenorhabditis elegans] 2.0E-14
Protein Domains
Database ID Description E-Value
Pfam IPR000433 EMBL-EBI Zn-finger, ZZ type 9.4E-10
Sequence
Target Sequence 
>C. ELEGANS:189967_AT
gacccatggtatgctcagcacatgtctagcaggaaaccgcaaacttatgaaagaatgcat
ccaaaactgaaagatacaactgatggtaaaaaagttcaaaaagtttctttccgcgatcgc
ttttacaagaaagcagaatctagcctcgataaacacgaaaagcaacttcgattcgatctt
tcggcttcacgtcaagaattcatcagagaaaaggaaaagttcagagttgaaaaggaaacg
ctcatgaaacaaaaggaacaaattgaagagatgatgaagcaagaaactataaacttcgaa
acgaatagggctttcttttcggatcgttttgaaccgatttttaataaagtcaaagatgga
aagaaaagcgaagatgatactacaagaaaagtcgaatttgaagttgaaactgctgagagc
aactatcccggatctattttttcggatgaagattctttgagtgatcttgctgaaattctc
aaagacattgaagaatatgagtgttcgtctgagagctctgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCCATGGTATGCTCAGCACATGT 614 381 934 Antisense
AGCACATGTCTAGCAGGAAACCGCA 223 75 950 Antisense
TTTCTTTCCGCGATCGCTTTTACAA 93 671 1037 Antisense
GCAGAATCTAGCCTCGATAAACACG 559 313 1066 Antisense
GCAACTTCGATTCGATCTTTCGGCT 448 317 1095 Antisense
GATCTTTCGGCTTCACGTCAAGAAT 710 419 1108 Antisense
GAATAGGGCTTTCTTTTCGGATCGT 575 325 1236 Antisense
ACTGCTGAGAGCAACTATCCCGGAT 133 99 1342 Antisense
TCCCGGATCTATTTTTTCGGATGAA 136 597 1359 Antisense
GATTCTTTGAGTGATCTTGCTGAAA 610 431 1384 Antisense
TGAGTGTTCGTCTGAGAGCTCTGAT 567 567 1431 Antisense
Sequence Source Affymetrix Proprietary Database