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[189965_at] zinc finger protein

Description T01G6.5 /REP_DB=WormBase Gene ID /WP=CE12998 /TR=O16965 /GB=AAG24178.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 49      4grp_total > 14      6grp_cgc > 08      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 141.5
(3)
P 		63.1
(-0.5)
A 		7.9
(-3)
A 		135.2
(2.7)
P 		134
B 105.7
(-0.1)
P 		60.5
(-3)
A 		59.8
(-3)
A 		153.7
(3)
M 		94
C 128.3
(1.3)
P 		62
(-3)
A 		78.8
(-1.9)
A 		155.3
(3)
P 		93
avr 125.2
(1.6) 		61.9
(-2.2) 		48.8
(-3) 		148.1
(3) 		99

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 103.9
(0)
A 		88.1
(-1.4)
P 		70.4
(-3)
A 		136.8
(3)
P 		94.9
(-0.8)
A 		118.1
(1.3)
A 		66
B 107.3
(3)
A 		77.3
(-1.6)
A 		68.3
(-3)
A 		106.8
(2.9)
P 		86.4
(-0.2)
A 		85.9
(-0.3)
P 		39
C 112.9
(2)
P 		70.8
(-1.3)
A 		125.3
(3)
M 		48.4
(-3)
A 		110.6
(1.9)
A 		99.7
(1)
A 		77
avr 108
(3) 		78.7
(-3) 		88
(-1.1) 		97.3
(0.8) 		97.3
(0.8) 		101.2
(1.6) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 51.5
(3)
P 		13.7
(-1.6)
A 		2.1
(-3)
A 		19.8
(-0.9)
P 		49
B 33.7
(3)
P 		15
(-2.7)
A 		13.9
(-3)
A 		32.8
(2.7)
M 		20
C 42.5
(3)
P 		17.8
(-3)
A 		27.5
(-0.6)
A 		26.2
(-1)
P 		25
avr 42.6
(3) 		15.5
(-2.8) 		14.5
(-3) 		26.3
(-0.5) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 19.2
(-1.8)
A 		31.3
(1.9)
P 		15.3
(-3)
A 		34.7
(3)
P 		28.6
(1.1)
A 		28.8
(1.2)
A 		19
B 37.3
(3)
A 		25.7
(-0.4)
A 		16.6
(-3)
A 		28.3
(0.4)
P 		35.1
(2.4)
A 		32
(1.5)
P 		21
C 41.8
(3)
P 		21.6
(-0.8)
A 		31.9
(1.1)
M 		9.7
(-3)
A 		35.8
(1.9)
A 		33.4
(1.4)
A 		32
avr 32.8
(2.8) 		26.2
(-0.5) 		21.3
(-3) 		24.2
(-1.5) 		33.2
(3) 		31.4
(2.1) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189965_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15223
Sequence Type Exemplar sequence
Representative Public ID T01G6.5 NCBI
Target Description T01G6.5 /REP_DB=WormBase Gene ID /WP=CE12998 /TR=O16965 /GB=AAG24178.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070817(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070817 NCBI Caenorhabditis elegans T01G6.5 (T01G6.5) mRNA, complete cds. 11/11 None
SNAP00000003998 ENSEMBL cdna:SNAP chromosome:CEL140:V:486989:488905:1 10/11 None
GENEFINDER00000004010 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:484763:489453:1 11/11 None
T01G6.5 ENSEMBL cdna:known chromosome:CEL140:V:486819:488905:1 gene:T01G6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:486818-488905(+) 99.91 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol nhr-211
Ensembl T01G6.5
Entrez Gene 187963 Entrez gene
SwissProt O16965 EMBL-EBI
WormBase CE12998 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG24178 Hypothetical protein T01G6.5 [Caenorhabditis elegans] ref|NP_503218.1| T01G6.5 [Caenorhabditis elegans] 0.0
blast AAG24182 Hypothetical protein T01G6.6 [Caenorhabditis elegans] ref|NP_503217.2| T01G6.6 [Caenorhabditis elegans] 0.0
blast CAE62313 Hypothetical protein CBG06378 [Caenorhabditis briggsae] 1.0E-155
blast AAG24178 Hypothetical protein T01G6.5 [Caenorhabditis elegans] ref|NP_503218.1| T01G6.5 [Caenorhabditis elegans] 1.0E-153
blast AAG24181 Nuclear hormone receptor family protein 106 [Caenorhabditis elegans] ref|NP_503219.1| Nuclear Hormone Receptor family member (nhr-106) [Caenorhabditis elegans] gb|AAO39194.1| nuclear receptor NHR-106 [Caenorhabditis elegans] 1.0E-106
blast T32193 hypothetical protein T01G6.4 - Caenorhabditis elegans 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.9E-14
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 3.1E-14
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.9E-14
Sequence
Target Sequence 
>C. ELEGANS:189965_AT
gatgggttttcagagcttccggataaattgaagatgcaaattctccagtccatctggcat
gtatgggcccgtcttttcaaagcggcccggtcagcgcagctcagaaaacgacagggacta
ttctcaaatgcccttcaaatttctgacaatctgtatgtagaaatggagactattcgaatg
gatgtcacgtggcttaccagatattctttcgatcaggttaaatattttttgtacggcgtg
gaagaggactcttatttgaaggattctatagaatcattgacaaaactcgagctgacagaa
attgaactcatctatatgactgctcaattatcgttcctatatgctcaaaatcgattttcc
ggaacagaaatcggtgaaatctgtgagaagcttcaagatggtctgggcaatgatttgcat
aattattacacgaaacccgagaagaaaaatcgaaattatgtggggaggctcacgcaaatg
ctcaaaataaattttagtttaatgaaaaatattcgaacgacacgggaaaggtcactgatt
gctcagacatttgacatttttatcgccgactat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGGTTTTCAGAGCTTCCGGATA 517 405 556 Antisense
GCAAATTCTCCAGTCCATCTGGCAT 688 317 591 Antisense
CCGGTCAGCGCAGCTCAGAAAACGA 458 265 642 Antisense
GACTATTCTCAAATGCCCTTCAAAT 401 371 671 Antisense
TCGAATGGATGTCACGTGGCTTACC 173 601 729 Antisense
GTGGCTTACCAGATATTCTTTCGAT 225 489 744 Antisense
ATGACTGCTCAATTATCGTTCCTAT 465 45 871 Antisense
GAAGCTTCAAGATGGTCTGGGCAAT 13 343 942 Antisense
TGGGGAGGCTCACGCAAATGCTCAA 320 553 1016 Antisense
ACGGGAAAGGTCACTGATTGCTCAG 440 95 1077 Antisense
ATTTGACATTTTTATCGCCGACTAT 85 19 1104 Antisense
Sequence Source Affymetrix Proprietary Database