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[189963_at] zinc-finger protein

Description F07E5.5 /REP_DB=WormBase Gene ID /WP=CE27916 /TR=P91223 /GB=AAB37904.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=zinc-finger protein
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 79      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 84      6grp_total > 69      4grp_total > 02      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4581
1 2 3 4 range
A 1027.8
(-2.5)
P 		720.1
(-3)
P 		743.1
(-3)
P 		4454
(3)
P 		3734
B 1105.2
(-2.7)
P 		973.9
(-2.9)
P 		915.4
(-3)
P 		5301
(3)
P 		4386
C 1143
(-2.6)
P 		973.6
(-3)
P 		948
(-3)
P 		4205
(3)
P 		3257
avr 1092
(-2.6) 		889.2
(-3) 		868.8
(-3) 		4653.3
(3) 		3785

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 706
1 2 3 4 5 6 range
A 585.3
(-0)
P 		600.9
(0.2)
P 		309.4
(-3)
P 		572
(-0.2)
P 		522.6
(-0.7)
P 		863.7
(3)
P 		554
B 657.7
(-0.2)
P 		549.7
(-1.2)
P 		344.4
(-3)
P 		441.8
(-2.1)
P 		720.9
(0.4)
P 		1015.6
(3)
P 		671
C 813
(1.8)
P 		463.9
(-3)
P 		521.5
(-2.2)
P 		566.4
(-1.6)
P 		899.7
(3)
P 		817.6
(1.9)
P 		436
avr 685.3
(0.5) 		538.2
(-1.3) 		391.8
(-3) 		526.7
(-1.4) 		714.4
(0.8) 		899
(3) 		507
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 973
1 2 3 4 range
A 374.2
(-0.4)
P 		156.3
(-3)
P 		194.3
(-2.5)
P 		652
(3)
P 		496
B 352.4
(-2.1)
P 		240.5
(-2.8)
P 		212.1
(-3)
P 		1129.6
(3)
P 		918
C 378.4
(-1.6)
P 		279.9
(-3)
P 		330.4
(-2.3)
P 		709
(3)
P 		429
avr 368.3
(-1.6) 		225.6
(-3) 		245.6
(-2.8) 		830.2
(3) 		605

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 311
1 2 3 4 5 6 range
A 107.9
(-1.3)
P 		213.7
(3)
P 		67.4
(-3)
P 		145.1
(0.2)
P 		157.7
(0.7)
P 		210.3
(2.9)
P 		146
B 228.8
(-0)
P 		183
(-1)
P 		83.6
(-3)
P 		117
(-2.3)
P 		292.9
(1.3)
P 		378.7
(3)
P 		295
C 301.3
(3)
P 		141.6
(-2.1)
P 		132.7
(-2.4)
P 		113.9
(-3)
P 		291.1
(2.7)
P 		273.7
(2.1)
P 		187
avr 212.7
(0.7) 		179.4
(-0.4) 		94.6
(-3) 		125.3
(-2) 		247.2
(1.7) 		287.6
(3) 		193
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189963_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5381
Sequence Type Exemplar sequence
Representative Public ID F07E5.5 NCBI
Target Description F07E5.5 /REP_DB=WormBase Gene ID /WP=CE27916 /TR=P91223 /GB=AAB37904.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=zinc-finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061767(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061767 NCBI Caenorhabditis elegans F07E5.5 (F07E5.5) mRNA, complete cds. 10/11 A 
SNAP00000023365 ENSEMBL cdna:SNAP chromosome:CEL140:II:2054011:2059064:-1 9/11 None
GENEFINDER00000023373 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2054011:2059064:-1 11/11 None
F07E5.5 ENSEMBL cdna:known chromosome:CEL140:II:2053927:2059071:-1 gene:F07E5.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2054009-2059063(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc-finger protein
Ensembl F07E5.5
Entrez Gene 173564 Entrez gene
SwissProt P91223 EMBL-EBI
WormBase CE27916 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37904 Hypothetical protein F07E5.5 [Caenorhabditis elegans] ref|NP_494168.1| F07E5.5 [Caenorhabditis elegans] 1.0E-168
blast AAB37904 Hypothetical protein F07E5.5 [Caenorhabditis elegans] ref|NP_494168.1| F07E5.5 [Caenorhabditis elegans] 1.0E-161
blast AAB37904 Hypothetical protein F07E5.5 [Caenorhabditis elegans] ref|NP_494168.1| F07E5.5 [Caenorhabditis elegans] 1.0E-149
blast CAE73071 Hypothetical protein CBG20443 [Caenorhabditis briggsae] 1.0E-116
blast CAE73071 Hypothetical protein CBG20443 [Caenorhabditis briggsae] 1.0E-109
blast CAE73071 Hypothetical protein CBG20443 [Caenorhabditis briggsae] 6.0E-98
blast XP_424900 PREDICTED: similar to zinc finger, CCHC domain containing 9 [Gallus gallus] 7.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR001878 EMBL-EBI Zn-finger, CCHC type 1.5E-5
Pfam IPR001878 EMBL-EBI Zn-finger, CCHC type 8.9E-7
Pfam IPR001878 EMBL-EBI Zn-finger, CCHC type 1.5E-5
Pfam IPR001878 EMBL-EBI Zn-finger, CCHC type 8.9E-7
Sequence
Target Sequence 
>C. ELEGANS:189963_AT
ttgaggcttaaacgtctccgtgagaaattgaacaaagtgctcggcgatggagcttcattg
gaagctgtaaagcagaaaatcaatgattggcgagctgctggaaaggttactgtagccgat
gctatgcttttggtgaaaagatggaaaacgagagagacgagacgaatcggacgtcaggat
cagaagattaccggctccgcatgcttccactgccgtgagccaggccatcgcctggctgat
tgccccaaaaggaatagttcatcatcggatggtgtatgcttcaagtgtggatccatggaa
cactcgattcacgaatgcaagaagaaaggagtcaaaggttttccatatgccacgtgcttc
gtgtgcaaacaagtcggacacatttcccgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAGGCTTAAACGTCTCCGTGAGA 684 705 502 Antisense
AAGTGCTCGGCGATGGAGCTTCATT 130 159 536 Antisense
TGGCGAGCTGCTGGAAAGGTTACTG 489 543 589 Antisense
GTAGCCGATGCTATGCTTTTGGTGA 463 457 613 Antisense
GGATCAGAAGATTACCGGCTCCGCA 551 511 678 Antisense
GTGAGCCAGGCCATCGCCTGGCTGA 352 483 716 Antisense
GCCTGGCTGATTGCCCCAAAAGGAA 47 283 731 Antisense
GGATCCATGGAACACTCGATTCACG 695 511 790 Antisense
GTCAAAGGTTTTCCATATGCCACGT 165 463 832 Antisense
TATGCCACGTGCTTCGTGTGCAAAC 447 657 847 Antisense
AAACAAGTCGGACACATTTCCCGCG 11 127 868 Antisense
Sequence Source Affymetrix Proprietary Database