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[189962_at] zinc finger protein

Description C15F1.5 /REP_DB=WormBase Gene ID /WP=CE23549 /TR=Q9N5Y3 /GB=AAF39758.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_high1_10_10 > 86      6grp_total > 78      4grp_total > 12      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 70
(-2.6)
A 		80.9
(-1.9)
A 		65.1
(-3)
A 		148.4
(3)
P 		83
B 62.5
(3)
A 		47.3
(0.6)
A 		24.2
(-3)
A 		50.4
(1.1)
A 		38
C 44.6
(-0.9)
A 		20.8
(-2.6)
A 		16
(-3)
A 		97.5
(3)
A 		82
avr 59
(-0.7) 		49.7
(-1.6) 		35.1
(-3) 		98.8
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 85.1
(-1.1)
A 		44.1
(-3)
A 		57.3
(-2.4)
A 		116.4
(0.3)
P 		123.8
(0.6)
P 		175.4
(3)
P 		131
B 74.8
(-2)
P 		100
(-0.8)
P 		93.6
(-1.1)
P 		54.6
(-3)
P 		101.7
(-0.7)
P 		176.5
(3)
P 		122
C 74.8
(-2.7)
P 		67.2
(-3)
P 		101.9
(-1.6)
P 		75.4
(-2.7)
A 		118.9
(-0.9)
P 		212.5
(3)
P 		145
avr 78.2
(-2.6) 		70.4
(-3) 		84.3
(-2.3) 		82.1
(-2.4) 		114.8
(-0.7) 		188.1
(3) 		118
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 25.5
(3)
A 		17.6
(-2.6)
A 		17
(-3)
A 		21.7
(0.3)
P 		9
B 19.9
(3)
A 		11.7
(-0.4)
A 		5.6
(-3)
A 		10.7
(-0.9)
A 		14
C 14.8
(2.1)
A 		6
(-2.8)
A 		5.6
(-3)
A 		16.4
(3)
A 		11
avr 20.1
(3) 		11.8
(-1.7) 		9.4
(-3) 		16.3
(0.9) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 15.7
(-2.4)
A 		15.7
(-2.4)
A 		12.5
(-3)
A 		29.5
(0.4)
P 		37.4
(1.9)
P 		42.7
(3)
P 		30
B 26
(-1.7)
P 		33.3
(-0.8)
P 		22.7
(-2)
P 		14.5
(-3)
P 		41.3
(0.1)
P 		65.8
(3)
P 		51
C 27.7
(-1.7)
P 		20.5
(-2.4)
P 		25.9
(-1.9)
P 		15.2
(-3)
A 		38.5
(-0.5)
P 		71.1
(3)
P 		56
avr 23.1
(-2.5) 		23.2
(-2.5) 		20.4
(-2.9) 		19.7
(-3) 		39.1
(-0.1) 		59.9
(3) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189962_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4252
Sequence Type Exemplar sequence
Representative Public ID C15F1.5 NCBI
Target Description C15F1.5 /REP_DB=WormBase Gene ID /WP=CE23549 /TR=Q9N5Y3 /GB=AAF39758.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063028(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063028 NCBI Caenorhabditis elegans C15F1.5 (C15F1.5) mRNA, complete cds. 11/11 None
SNAP00000007583 ENSEMBL cdna:SNAP chromosome:CEL140:II:6967913:6970516:-1 11/11 None
GENEFINDER00000007597 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:6967913:6970516:-1 11/11 None
C15F1.5 ENSEMBL cdna:known chromosome:CEL140:II:6967913:6970516:-1 gene:C15F1.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6967908-6970512(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Ensembl C15F1.5
Entrez Gene 174139 Entrez gene
SwissProt Q9N5Y3 EMBL-EBI
WormBase CE20510 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39758 Hypothetical protein C15F1.5 [Caenorhabditis elegans] ref|NP_495429.2| C15F1.5 [Caenorhabditis elegans] 0.0
blast CAE66004 Hypothetical protein CBG11195 [Caenorhabditis briggsae] 0.0
blast CAE66004 Hypothetical protein CBG11195 [Caenorhabditis briggsae] 1.0E-174
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 6.5E-7
Sequence
Target Sequence 
>C. ELEGANS:189962_AT
atgcgacccgacaaccatgtatgggatcactacactgtgagggtgaagttcttcgaaact
tcccttctgaattggagtgtgaccatgatgtatgtattaaatgcatcggatcaatgcttg
acgaatgtgagaaaaatggaaagtcaccggcttgtcctgttaaaacatgtgcaattccgt
atcgatgtgaaagcgttttggcgttggatgctcagtttccagagaagaaggcgtttttct
ccaagttcactcttcaggcaaaattttcgatgcaaactttgaaggatgacattgtaacga
ttggccagtgtgatgacgacgatggaggaatgccaatggagttcgttagggaaggaacgc
tcggagacctggtcagggaaactcgtcgtgttctgaaaattctacccaccgacaaaatct
acggatactatcgcattgatgacaataagaagtcgaaactcgatgtgacaaaagatacaa
tccgatcttcttgttcttctttgaacatcaacgagaacactactgtacttgtcgatacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCGACCCGACAACCATGTATGGG 59 41 533 Antisense
TTCTTCGAAACTTCCCTTCTGAATT 594 689 581 Antisense
TCACCGGCTTGTCCTGTTAAAACAT 258 625 676 Antisense
GCGTTTTGGCGTTGGATGCTCAGTT 675 289 725 Antisense
TCTCCAAGTTCACTCTTCAGGCAAA 443 609 770 Antisense
GATTGGCCAGTGTGATGACGACGAT 651 435 831 Antisense
GGAAGGAACGCTCGGAGACCTGGTC 691 531 882 Antisense
GGTCAGGGAAACTCGTCGTGTTCTG 246 499 903 Antisense
TTCTGAAAATTCTACCCACCGACAA 701 693 923 Antisense
GATACAATCCGATCTTCTTGTTCTT 211 423 1006 Antisense
GAACACTACTGTACTTGTCGATACC 245 351 1047 Antisense
Sequence Source Affymetrix Proprietary Database