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[189960_at] acid phosphatase

Description C05C10.1 /REP_DB=WormBase Gene ID /WP=CE01465 /TR=SW:Q09448 /GB=CAA88204.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=acid phosphatase
Cluster 6grp_total > 18      4grp_total > 59      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 52.8
(-1.6)
A 		72.8
(-0.7)
A 		160.3
(3)
A 		19.6
(-3)
A 		141
B 105.3
(-0.3)
A 		179.6
(3)
A 		55.7
(-2.4)
A 		43.1
(-3)
A 		137
C 77.4
(3)
A 		19.1
(-3)
A 		76.3
(2.9)
A 		72.8
(2.5)
A 		58
avr 78.5
(0.8) 		90.5
(2.2) 		97.4
(3) 		45.2
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 120.5
(3)
A 		43.1
(-1.2)
A 		10.9
(-3)
A 		45.1
(-1.1)
A 		65.1
(-0)
A 		87.7
(1.2)
A 		110
B 138.9
(3)
A 		83.6
(-0.2)
A 		70.5
(-1)
A 		89.2
(0.1)
A 		94
(0.4)
A 		35.8
(-3)
A 		103
C 49.9
(-3)
A 		114
(3)
A 		86.8
(0.5)
A 		84.6
(0.2)
A 		56
(-2.4)
A 		76.7
(-0.5)
A 		64
avr 103.1
(3) 		80.2
(0.1) 		56.1
(-3) 		73
(-0.8) 		71.7
(-1) 		66.7
(-1.6) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 19.2
(-0.5)
A 		15.8
(-1)
A 		41.9
(3)
A 		2.9
(-3)
A 		39
B 33.6
(1.2)
A 		44.4
(3)
A 		12.9
(-2.4)
A 		9.2
(-3)
A 		35
C 25.6
(2.7)
A 		5.5
(-3)
A 		26.6
(3)
A 		12.3
(-1.1)
A 		21
avr 26.1
(2.7) 		21.9
(1.4) 		27.1
(3) 		8.1
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 22.2
(3)
A 		15.3
(0.9)
A 		2.4
(-3)
A 		11.4
(-0.3)
A 		19.6
(2.2)
A 		21.3
(2.7)
A 		20
B 48.3
(3)
A 		27.8
(-0.5)
A 		17.1
(-2.4)
A 		23.6
(-1.2)
A 		38.2
(1.3)
A 		13.4
(-3)
A 		35
C 18.5
(-2.5)
A 		34.8
(3)
A 		22.1
(-1.3)
A 		17
(-3)
A 		18.1
(-2.6)
A 		25.7
(-0.1)
A 		18
avr 29.7
(3) 		26
(1.6) 		13.9
(-3) 		17.3
(-1.7) 		25.3
(1.3) 		20.1
(-0.6) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189960_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3091
Sequence Type Exemplar sequence
Representative Public ID C05C10.1 NCBI
Target Description C05C10.1 /REP_DB=WormBase Gene ID /WP=CE01465 /TR=SW:Q09448 /GB=CAA88204.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=acid phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063739(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063739 NCBI Caenorhabditis elegans C05C10.1 (C05C10.1) mRNA, complete cds. 11/11 None
C05C10.1 ENSEMBL cdna:known chromosome:CEL140:II:9917172:9920276:-1 gene:C05C10.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016010 8/11 Cross Hyb Matching Probes None
GENEFINDER00000016021 3/11 Cross Hyb Matching Probes None
GENEFINDER00000016022 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9917168-9920273(-) 100.0 100.0
Public Domain and Genome References
Gene Title acid phosphatase
Ensembl C05C10.1
Entrez Gene 182251 Entrez gene
SwissProt Q09448 EMBL-EBI
WormBase CE01465 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3993 acid phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88204 Hypothetical protein C05C10.1 [Caenorhabditis elegans] ref|NP_496140.1| C05C10.1 [Caenorhabditis elegans] sp|Q09448|PPAV_CAEEL Putative acid phosphatase C05C10.1 0.0
blast CAE57945 Hypothetical protein CBG01002 [Caenorhabditis briggsae] 1.0E-163
blast CAA88205 Hypothetical protein C05C10.4 [Caenorhabditis elegans] ref|NP_496143.1| C05C10.4 [Caenorhabditis elegans] sp|Q09451|PPAW_CAEEL Putative acid phosphatase C05C10.4 1.0E-158
Protein Domains
Database ID Description E-Value
Pfam IPR000560 EMBL-EBI Histidine acid phosphatase 2.4E-57
Sequence
Target Sequence 
>C. ELEGANS:189960_AT
ttgggaatcccgcatatttccgcaaccgaagatggatggccttcatatgccgctgcaatt
ttcttcgagttttacagaaatagccagacgaataaaagattgttcaaagtgctgtatcgc
caggatgccagttcacaaattacggatgtgactagtcaagtcccaatgtgccaaggagtt
tcgatgtgtcctttatcaacttttcagcatctggcagatgtcttaaagcccattcctgat
ataaataccgtaggttgttgccaatggcccttttcgccatataccaacagcgctagtaag
cctccaatggattttgaatgctccgaaccgcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGGAATCCCGCATATTTCCGCAA 5 705 892 Antisense
AGATGGATGGCCTTCATATGCCGCT 45 69 921 Antisense
GCTGCAATTTTCTTCGAGTTTTACA 52 297 943 Antisense
TATCGCCAGGATGCCAGTTCACAAA 281 659 1006 Antisense
ACTAGTCAAGTCCCAATGTGCCAAG 527 101 1042 Antisense
GTGTCCTTTATCAACTTTTCAGCAT 376 487 1077 Antisense
GCAGATGTCTTAAAGCCCATTCCTG 662 311 1105 Antisense
ACCGTAGGTTGTTGCCAATGGCCCT 305 87 1138 Antisense
CAATGGCCCTTTTCGCCATATACCA 357 179 1153 Antisense
CCAACAGCGCTAGTAAGCCTCCAAT 589 275 1175 Antisense
GATTTTGAATGCTCCGAACCGCTTT 105 409 1201 Antisense
Sequence Source Affymetrix Proprietary Database