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[189959_at] zinc finger protein

Description ZK488.1 /REP_DB=WormBase Gene ID /WP=CE15353 /TR=O17026 /GB=AAB69958.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 83      4grp_total > 53      6grp_cgc > 65      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 27.7
(3)
A 		5.9
(-3)
A 		27.6
(3)
A 		5.8
(-3)
A 		22
B 36.2
(-2.2)
A 		87.4
(3)
A 		33.1
(-2.5)
A 		28.4
(-3)
A 		59
C 44.8
(3)
A 		3.4
(-3)
A 		22.8
(-0.2)
A 		21.6
(-0.4)
A 		41
avr 36.2
(3) 		32.2
(1.6) 		27.8
(0.1) 		18.6
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 4.4
(-2.6)
A 		2.3
(-3)
A 		29.5
(2.4)
P 		4.9
(-2.5)
A 		32.5
(3)
A 		24.3
(1.4)
A 		30
B 3.7
(-3)
A 		28.2
(2.7)
A 		5.6
(-2.6)
A 		29.6
(3)
A 		4.4
(-2.8)
A 		8.4
(-1.9)
A 		26
C 28.7
(3)
A 		19.2
(0.4)
A 		13
(-1.3)
A 		6.6
(-3)
A 		16.9
(-0.2)
A 		14.2
(-0.9)
A 		22
avr 12.3
(-3) 		16.6
(1.6) 		16
(1) 		13.7
(-1.5) 		17.9
(3) 		15.6
(0.5) 		6
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 10.1
(3)
A 		1.3
(-2.7)
A 		7.2
(1.1)
A 		0.8
(-3)
A 		9
B 11.5
(-0.9)
A 		21.6
(3)
A 		7.7
(-2.4)
A 		6.1
(-3)
A 		16
C 14.8
(3)
A 		1
(-3)
A 		8
(0)
A 		3.6
(-1.9)
A 		14
avr 12.1
(3) 		8
(0.1) 		7.6
(-0.1) 		3.5
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.8
(-3)
A 		0.8
(-3)
A 		6.4
(0.7)
P 		1.2
(-2.7)
A 		9.8
(3)
A 		5.9
(0.4)
A 		9
B 1.3
(-3)
A 		9.4
(3)
A 		1.4
(-2.9)
A 		7.8
(1.8)
A 		1.8
(-2.6)
A 		3.1
(-1.7)
A 		8
C 10.6
(3)
A 		5.9
(-0)
A 		3.3
(-1.7)
A 		1.3
(-3)
A 		5.5
(-0.3)
A 		4.8
(-0.7)
A 		9
avr 4.2
(-0.9) 		5.4
(2.2) 		3.7
(-2.2) 		3.4
(-3) 		5.7
(3) 		4.6
(0.1) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189959_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15772
Sequence Type Exemplar sequence
Representative Public ID ZK488.1 NCBI
Target Description ZK488.1 /REP_DB=WormBase Gene ID /WP=CE15353 /TR=O17026 /GB=AAB69958.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070863(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070863 NCBI Caenorhabditis elegans ZK488.1 (ZK488.1) mRNA, complete cds. 11/11 None
ZK488.1 ENSEMBL cdna:known chromosome:CEL140:V:612474:614737:1 gene:ZK488.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:612473-614737(+) 87.28 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol nhr-250
Ensembl ZK488.1
Entrez Gene 191328 Entrez gene
SwissProt O17026 EMBL-EBI
WormBase CE15353 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB69958 Hypothetical protein ZK488.1 [Caenorhabditis elegans] ref|NP_503264.1| ZK488.1 [Caenorhabditis elegans] 0.0
blast CAE71065 Hypothetical protein CBG17908 [Caenorhabditis briggsae] 1.0E-85
blast NP_503231 R11G11.12 [Caenorhabditis elegans] gb|AAC69086.1| Hypothetical protein R11G11.12 [Caenorhabditis elegans] 1.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 2.0E-6
Sequence
Target Sequence 
>C. ELEGANS:189959_AT
atctggcacatttgggcgacgttagatcggcactcggcaaccgctgtctaccggaaaagt
tatccaaacgctgcaccaactcaaattgtctctcggcgaggagtattgatggacttggca
aagacgaatttcgattccacgtggattagtgattaccccgctgtgaatattgtatatttc
ctacgtcaaagttctcgggacaatttcgacattattgggtacctacaagatcttcaacca
accgatatggaaatgacttttatgttggcccagctttcatttgaatacgcaggaaagcgt
tgtcagggggatatcctcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTGGCACATTTGGGCGACGTTAG 313 33 538 Antisense
TTGGGCGACGTTAGATCGGCACTCG 699 701 549 Antisense
GGCAACCGCTGTCTACCGGAAAAGT 624 457 573 Antisense
AAAGTTATCCAAACGCTGCACCAAC 48 123 593 Antisense
GCACCAACTCAAATTGTCTCTCGGC 307 315 610 Antisense
GTGATTACCCCGCTGTGAATATTGT 93 483 686 Antisense
TATTTCCTACGTCAAAGTTCTCGGG 606 659 712 Antisense
TGGGTACCTACAAGATCTTCAACCA 105 553 753 Antisense
AATGACTTTTATGTTGGCCCAGCTT 497 163 789 Antisense
GTTGGCCCAGCTTTCATTTGAATAC 682 435 801 Antisense
AGCGTTGTCAGGGGGATATCCTCAA 601 81 833 Antisense
Sequence Source Affymetrix Proprietary Database