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[189958_at] zinc finger protein

Description F21A9.2 /REP_DB=WormBase Gene ID /WP=CE09522 /TR=O01527 /GB=AAB52466.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 49      4grp_high_8_8 > 19      6grp_highest_nonorm > 90      6grp_total > 39      4grp_total > 29      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 208.4
(3)
P 		133.4
(-3)
P 		154.4
(-1.3)
P 		152.5
(-1.5)
A 		75
B 163.1
(-1.4)
P 		182
(3)
P 		156
(-3)
P 		177.2
(1.9)
P 		26
C 164.8
(-0.4)
P 		200.5
(2.8)
P 		134.7
(-3)
P 		203
(3)
P 		68
avr 178.8
(3) 		172
(1.7) 		148.4
(-3) 		177.6
(2.8) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 223.7
(3)
P 		156.1
(-1.4)
P 		139.4
(-2.5)
P 		131.5
(-3)
P 		190.7
(0.9)
P 		194.7
(1.1)
P 		92
B 199.7
(2.6)
P 		206.1
(3)
P 		119.4
(-3)
P 		190.9
(1.9)
P 		197.9
(2.4)
P 		173.5
(0.7)
P 		87
C 164.4
(-0.7)
P 		166.4
(-0.5)
P 		130.2
(-3)
P 		197.8
(1.6)
P 		217.9
(3)
P 		184.6
(0.7)
P 		88
avr 195.9
(2.5) 		176.2
(0.8) 		129.7
(-3) 		173.4
(0.6) 		202.2
(3) 		184.3
(1.5) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 75.9
(3)
P 		28.9
(-2.3)
P 		40.4
(-1)
P 		22.3
(-3)
A 		54
B 52
(3)
P 		45
(0.3)
P 		36.2
(-3)
P 		37.8
(-2.4)
P 		16
C 54.5
(2.2)
P 		57.7
(3)
P 		47
(0.3)
P 		34.2
(-3)
P 		24
avr 60.8
(3) 		43.9
(-0.4) 		41.2
(-1) 		31.4
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 41.2
(-0.6)
P 		55.5
(2.6)
P 		30.4
(-3)
P 		33.3
(-2.4)
P 		57.5
(3)
P 		47.4
(0.8)
P 		27
B 69.5
(1.7)
P 		68.6
(1.6)
P 		29
(-3)
P 		50.6
(-0.5)
P 		80.4
(3)
P 		64.7
(1.2)
P 		51
C 60.9
(1.5)
P 		50.8
(-0.2)
P 		33.1
(-3)
P 		39.8
(-1.9)
P 		70.5
(3)
P 		61.8
(1.6)
P 		37
avr 57.2
(1.1) 		58.3
(1.3) 		30.8
(-3) 		41.2
(-1.4) 		69.5
(3) 		58
(1.2) 		39
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189958_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.91
Sequence Type Exemplar sequence
Representative Public ID F21A9.2 NCBI
Target Description F21A9.2 /REP_DB=WormBase Gene ID /WP=CE09522 /TR=O01527 /GB=AAB52466.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058803(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058803 NCBI Caenorhabditis elegans F21A9.2 (F21A9.2) mRNA, complete cds. 11/11 None
GENEFINDER00000020226 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3706099:3708765:-1 11/11 None
SNAP00000020222 ENSEMBL cdna:SNAP chromosome:CEL140:I:3706187:3708765:-1 11/11 None
F21A9.2 ENSEMBL cdna:known chromosome:CEL140:I:3706099:3708765:-1 gene:F21A9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3706098-3708765(-) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Ensembl F21A9.2
Entrez Gene 184756 Entrez gene
SwissProt O01527 EMBL-EBI
WormBase CE09522 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52466 Hypothetical protein F21A9.2 [Caenorhabditis elegans] ref|NP_491204.1| F21A9.2 [Caenorhabditis elegans] 0.0
blast AAB52466 Hypothetical protein F21A9.2 [Caenorhabditis elegans] ref|NP_491204.1| F21A9.2 [Caenorhabditis elegans] 1.0E-158
blast CAE66681 Hypothetical protein CBG12020 [Caenorhabditis briggsae] 1.0E-123
blast CAE66681 Hypothetical protein CBG12020 [Caenorhabditis briggsae] 1.0E-86
Sequence
Target Sequence 
>C. ELEGANS:189958_AT
ctcaaatcctttgctcattcataacaagagaaaattggaaatgccaaacttttcaacttc
gaaactctccgtgcagattcctattatcaatttggatgagaagaatgtaagaacttcaac
tcctctggatttatcctcatcaccccatgcaccaagtgttccatcactctcagccagttg
ttctccaacttcaaaaagctcgagcagtgagccaatctacccggaaagaccattctcgtg
cacttgtggagtctcgttttcgtctcagaccacgtatgacgcgcataagcaactgtactg
tagccacacaactcgtgtatcatctccaggtggtggaccacacagaaatgattctttgag
aaaggtaccggagaagtgtacaaaatgcgattttgtgccgacatcgtcctcgcagctatc
tatgcacattcgatcatcgcatcagacaacgaagacattcacatgtttggtgtgcggcta
ccgagcattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCAAATCCTTTGCTCATTCATAAC 125 229 555 Antisense
CTCTCCGTGCAGATTCCTATTATCA 591 231 619 Antisense
TTCAACTCCTCTGGATTTATCCTCA 263 685 669 Antisense
CTCGAGCAGTGAGCCAATCTACCCG 353 231 753 Antisense
CTACCCGGAAAGACCATTCTCGTGC 473 223 771 Antisense
GCACTTGTGGAGTCTCGTTTTCGTC 564 315 794 Antisense
TCTCAGACCACGTATGACGCGCATA 532 611 817 Antisense
GCAACTGTACTGTAGCCACACAACT 72 321 843 Antisense
TGCGATTTTGTGCCGACATCGTCCT 371 583 940 Antisense
TCCTCGCAGCTATCTATGCACATTC 203 593 961 Antisense
TTTGGTGTGCGGCTACCGAGCATTC 305 665 1020 Antisense
Sequence Source Affymetrix Proprietary Database