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[189957_at] zinc metalloprotease

Description T11F9.8 /REP_DB=WormBase Gene ID /WP=CE06420 /TR=Q22400 /GB=CAA98532.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=zinc metalloprotease
Cluster 6grp_total > 94      4grp_total > 03      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 23.1
(-2.4)
A 		13.7
(-2.8)
A 		8.4
(-3)
A 		164.6
(3)
P 		156
B 27.2
(0)
A 		32.4
(1.6)
A 		17.3
(-3)
A 		37
(3)
A 		20
C 23.5
(-2.4)
A 		13.8
(-3)
A 		24.3
(-2.4)
A 		118.3
(3)
P 		105
avr 24.6
(-2.5) 		20
(-2.8) 		16.7
(-3) 		106.6
(3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 24.3
(-2.6)
A 		29.3
(-2.1)
A 		40.4
(-1.2)
A 		19.1
(-3)
A 		89.2
(3)
P 		30.2
(-2)
A 		70
B 5.1
(-3)
A 		18.7
(-1.9)
A 		29.5
(-1.1)
A 		34.6
(-0.7)
A 		82.1
(3)
P 		49.1
(0.4)
P 		77
C 11.5
(-3)
A 		26.5
(-1.2)
A 		13.7
(-2.7)
A 		46.2
(1.2)
A 		61.1
(3)
P 		49.5
(1.6)
P 		50
avr 13.6
(-3) 		24.8
(-1.9) 		27.9
(-1.7) 		33.3
(-1.2) 		77.5
(3) 		42.9
(-0.2) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 8.4
(-1.3)
A 		3
(-2.8)
A 		2.2
(-3)
A 		24.1
(3)
P 		22
B 8.7
(3)
A 		8
(2.1)
A 		4
(-3)
A 		7.9
(2)
A 		5
C 7.8
(-1.6)
A 		4
(-3)
A 		8.5
(-1.3)
A 		19.9
(3)
P 		16
avr 8.3
(-1.4) 		5
(-3) 		4.9
(-3) 		17.3
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 4.5
(-3)
A 		10.4
(-1.4)
A 		8.8
(-1.8)
A 		4.8
(-2.9)
A 		26.9
(3)
P 		7.3
(-2.3)
A 		22
B 1.8
(-3)
A 		6.2
(-2.2)
A 		7.2
(-2)
A 		9.2
(-1.6)
A 		33.4
(3)
P 		18.3
(0.1)
P 		32
C 4.3
(-2.7)
A 		8.1
(-1.3)
A 		3.5
(-3)
A 		9.3
(-0.9)
A 		19.8
(3)
P 		16.6
(1.8)
P 		16
avr 3.5
(-3) 		8.2
(-1.8) 		6.5
(-2.2) 		7.8
(-1.9) 		26.7
(3) 		14.1
(-0.3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189957_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13781
Sequence Type Exemplar sequence
Representative Public ID T11F9.8 NCBI
Target Description T11F9.8 /REP_DB=WormBase Gene ID /WP=CE06420 /TR=Q22400 /GB=CAA98532.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=zinc metalloprotease
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073509(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073509 NCBI Caenorhabditis elegans T11F9.8 (T11F9.8) mRNA, complete cds. 11/11 None
SNAP00000013923 ENSEMBL cdna:SNAP chromosome:CEL140:V:11479931:11480446:1 11/11 None
T11F9.8 ENSEMBL cdna:known chromosome:CEL140:V:11479931:11480446:1 gene:T11F9.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000013941 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11479930-11480446(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc metalloprotease
Ensembl T11F9.8
Entrez Gene 188425 Entrez gene
SwissProt Q22400 EMBL-EBI
WormBase CE06420 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98532 Hypothetical protein T11F9.8 [Caenorhabditis elegans] ref|NP_505910.1| T11F9.8 [Caenorhabditis elegans] 7.0E-92
blast Q22398 Zinc metalloproteinase nas-22 precursor (Nematode astacin 22) 7.0E-92
blast CAE75254 Hypothetical protein CBG23214 [Caenorhabditis briggsae] 4.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR001506 EMBL-EBI Peptidase M12A, astacin 3.5E-5
Sequence
Target Sequence 
>C. ELEGANS:189957_AT
gggatctgcaatagtagctttctacgactacctaatgatcaacaagtactatgaatgttc
ttgtgcaaataatctatcgtgtaagaaccatggatacccaaatccttcaaattgttcaca
atgtaattgtccatatggatttggcggagctgattgtagtcaacgcgccgagccaggtgc
aacttttcaagcaactgaaacttggcagaatgtcacaatttctttagacgctggatatag
atatttggaaaataatcagaaacttccgcaagttgatttcatatatcagtttttgtggat
tatggccccagctaacaaaacaacacaaattcgagtggagaagtttgtagaaggaaagtg
tttgcctggatgtattcggggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGATCTGCAATAGTAGCTTTCTAC 581 495 27 Antisense
AGCTTTCTACGACTACCTAATGATC 93 79 42 Antisense
GAACCATGGATACCCAAATCCTTCA 28 347 111 Antisense
TACCCAAATCCTTCAAATTGTTCAC 645 649 121 Antisense
GTCCATATGGATTTGGCGGAGCTGA 100 477 155 Antisense
GGAGCTGATTGTAGTCAACGCGCCG 86 521 172 Antisense
GTCACAATTTCTTTAGACGCTGGAT 627 463 238 Antisense
GAAACTTCCGCAAGTTGATTTCATA 292 357 285 Antisense
GTTTTTGTGGATTATGGCCCCAGCT 441 449 315 Antisense
GGCCCCAGCTAACAAAACAACACAA 568 539 330 Antisense
GTGTTTGCCTGGATGTATTCGGGGT 374 483 384 Antisense
Sequence Source Affymetrix Proprietary Database