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[189951_at] homeobox protein

Description C33D12.1 /REP_DB=WormBase Gene ID /WP=CE06903 /GEN=ceh-31 /GB=AAK39202.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=homeobox protein
Cluster 6grp_high1_10_10 > 26      4grp_high_8_8 > 26      6grp_total > 25      4grp_total > 38      6grp_cgc > 24      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 144.1
(3)
P 		106.4
(0)
P 		68.2
(-3)
P 		128
(1.7)
M 		76
B 171
(3)
P 		117.3
(-1.4)
P 		98.4
(-3)
P 		116
(-1.5)
P 		73
C 142.6
(3)
P 		96.8
(-2.1)
P 		89.1
(-3)
P 		101.8
(-1.6)
A 		54
avr 152.6
(3) 		106.8
(-1.1) 		85.2
(-3) 		115.3
(-0.3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 185.4
(3)
P 		135.4
(0.6)
P 		121.8
(-0.1)
P 		99.7
(-1.1)
P 		61
(-3)
A 		155.6
(1.6)
P 		124
B 165.3
(3)
P 		146
(2)
P 		52.6
(-3)
P 		111
(0.1)
P 		71.1
(-2)
P 		57.4
(-2.7)
P 		113
C 198.7
(3)
P 		177.2
(2.2)
P 		110.3
(-0.3)
P 		138.6
(0.8)
P 		37.8
(-3)
P 		57
(-2.3)
A 		161
avr 183.1
(3) 		152.9
(1.6) 		94.9
(-1.2) 		116.4
(-0.2) 		56.6
(-3) 		90
(-1.4) 		127
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 52.5
(3)
P 		23.1
(-2.1)
P 		17.8
(-3)
P 		18.7
(-2.8)
M 		35
B 54.5
(3)
P 		29
(-1.8)
P 		22.8
(-3)
P 		24.7
(-2.6)
P 		32
C 47.2
(3)
P 		27.8
(-0.9)
P 		31.1
(-0.2)
P 		17.2
(-3)
A 		30
avr 51.4
(3) 		26.6
(-1.8) 		23.9
(-2.3) 		20.2
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 34.2
(0.2)
P 		48.1
(3)
P 		26.5
(-1.4)
P 		25.3
(-1.6)
P 		18.4
(-3)
A 		37.9
(0.9)
P 		30
B 57.5
(3)
P 		48.6
(1.8)
P 		12.8
(-3)
P 		29.4
(-0.8)
P 		28.9
(-0.8)
P 		21.4
(-1.8)
P 		45
C 73.7
(3)
P 		54.1
(1.1)
P 		28.1
(-1.4)
P 		27.9
(-1.5)
P 		12.2
(-3)
P 		19.1
(-2.3)
A 		62
avr 55.1
(3) 		50.3
(2.2) 		22.5
(-2.5) 		27.5
(-1.7) 		19.8
(-3) 		26.1
(-1.9) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189951_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18384
Sequence Type Exemplar sequence
Representative Public ID C33D12.1 NCBI
Target Description C33D12.1 /REP_DB=WormBase Gene ID /WP=CE06903 /GEN=ceh-31 /GB=AAK39202.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=homeobox protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076124(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076124 NCBI Caenorhabditis elegans C.Elegans Homeobox family member (ceh-31) (ceh-31) mRNA, complete cds. 11/11 None
C33D12.1 ENSEMBL cdna:known chromosome:CEL140:X:3068865:3069936:-1 gene:C33D12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3068864-3069936(-) 100.0 100.0
Public Domain and Genome References
Gene Title homeobox protein
Gene Symbol ceh-31
Ensembl C33D12.1
Entrez Gene 191621 Entrez gene
SwissProt Q22910 EMBL-EBI
WormBase CE06903 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39202 C.elegans homeobox protein 31 [Caenorhabditis elegans] ref|NP_508525.1| C.Elegans Homeobox family member (ceh-31) [Caenorhabditis elegans] sp|Q22910|HM31_CAEEL Homeobox protein ceh-31 1.0E-121
blast CAE68371 Hypothetical protein CBG14126 [Caenorhabditis briggsae] 2.0E-80
blast CAE68370 Hypothetical protein CBG14125 [Caenorhabditis briggsae] 3.0E-35
Protein Domains
Database ID Description E-Value
scop a.4.1.Homeodomain All alpha proteins; DNA/RNA-binding 3-helical bundle; Homeodomain-like; Homeodomain 1.99999996490334E-13
Pfam IPR001356 EMBL-EBI Homeobox 2.1E-17
Pfam IPR001356 EMBL-EBI Homeobox 42.0
Sequence
Target Sequence 
>C. ELEGANS:189951_AT
gagagtccgacatgcgtgggatcaaaaaaggctcggaaggcgagaactatcttcaccgac
aaacaacttcaagagctagaaaacacctttgagaagcagaagtacttgtctgttcaagat
aggatggagctggctcatcgaatggggctaacagatactcaaattggagctgctaccctg
ggaggcgcaaaaaatttgagaaaaaaagtgcttgaaatgaaaaaaaatgttcacggtact
ttcagaaccaaatggaaacgacaagcctctgttggtatggatcttcttcacgatgctgga
aatatggccgccgttcaacaacttctaagaacaaatccatattgggcaaactacttatca
cagaacacttcaatgtttggagcttctaataatcgccctgtattcaattcattagtcgtc
ccaacttcttcaatgattcctgctagcaactctcaaaattctctactgcaatttctagca
tcgcaaaacgtaaaagatgatatcagttccccaaaagaatcaccatcagtatctcctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGTCCGACATGCGTGGGATCAA 402 395 157 Antisense
GAAGGCGAGAACTATCTTCACCGAC 617 333 192 Antisense
GGAGCTGGCTCATCGAATGGGGCTA 613 517 282 Antisense
GCTGCTACCCTGGGAGGCGCAAAAA 244 297 325 Antisense
GGAAACGACAAGCCTCTGTTGGTAT 545 525 410 Antisense
TATGGATCTTCTTCACGATGCTGGA 527 653 432 Antisense
AAATATGGCCGCCGTTCAACAACTT 435 115 456 Antisense
TTGGAGCTTCTAATAATCGCCCTGT 512 705 533 Antisense
CAATTCATTAGTCGTCCCAACTTCT 128 179 561 Antisense
AATGATTCCTGCTAGCAACTCTCAA 695 163 588 Antisense
AAAGAATCACCATCAGTATCTCCTG 483 123 670 Antisense
Sequence Source Affymetrix Proprietary Database