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[189947_at] zinc finger protein

Description ZK488.4 /REP_DB=WormBase Gene ID /WP=CE15357 /TR=O17020 /GB=AAB69951.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 11      4grp_total > 04      6grp_cgc > 53      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 151
1 2 3 4 range
A 10.9
(-2.5)
A 		2.3
(-3)
A 		26.9
(-1.6)
A 		105.7
(3)
A 		103
B 68.8
(3)
A 		30.9
(-3)
A 		46.2
(-0.6)
A 		38.1
(-1.9)
A 		38
C 51
(-1.1)
A 		24.9
(-2.2)
A 		4.1
(-3)
A 		153.7
(3)
A 		150
avr 43.6
(-1.2) 		19.4
(-3) 		25.7
(-2.5) 		99.2
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 9.2
(-2.8)
A 		50.9
(0.8)
A 		77.3
(3)
A 		6.3
(-3)
A 		30.5
(-1)
A 		7.4
(-2.9)
A 		71
B 10.4
(-2.4)
A 		55.1
(3)
A 		18.8
(-1.4)
A 		5.3
(-3)
A 		50.7
(2.5)
A 		5.3
(-3)
A 		50
C 50.7
(0.3)
A 		87.9
(3)
A 		5.3
(-2.9)
A 		32
(-1)
A 		14.6
(-2.3)
A 		4.4
(-3)
A 		84
avr 23.4
(-1.2) 		64.6
(3) 		33.8
(-0.1) 		14.5
(-2.1) 		31.9
(-0.3) 		5.7
(-3) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 4
(-1.6)
A 		0.5
(-3)
A 		7
(-0.4)
A 		15.5
(3)
A 		15
B 21.9
(3)
A 		7.6
(-3)
A 		10.7
(-1.7)
A 		8.1
(-2.8)
A 		14
C 16.9
(0.8)
A 		7.2
(-1.6)
A 		1.4
(-3)
A 		25.9
(3)
A 		25
avr 14.3
(1.8) 		5.1
(-3) 		6.4
(-2.3) 		16.5
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 1.7
(-3)
A 		18.1
(3)
A 		16.8
(2.5)
A 		1.6
(-3)
A 		9.2
(-0.2)
A 		1.8
(-2.9)
A 		17
B 3.6
(-2.3)
A 		18.3
(2.3)
A 		4.6
(-2)
A 		1.4
(-3)
A 		20.6
(3)
A 		2
(-2.8)
A 		19
C 18.8
(1.1)
A 		26.8
(3)
A 		1.3
(-3)
A 		6.4
(-1.8)
A 		4.7
(-2.2)
A 		1.5
(-3)
A 		26
avr 8
(-1.1) 		21.1
(3) 		7.6
(-1.2) 		3.1
(-2.6) 		11.5
(0) 		1.8
(-3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189947_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14858
Sequence Type Exemplar sequence
Representative Public ID ZK488.4 NCBI
Target Description ZK488.4 /REP_DB=WormBase Gene ID /WP=CE15357 /TR=O17020 /GB=AAB69951.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070857(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070857 NCBI Caenorhabditis elegans ZK488.4 (ZK488.4) mRNA, complete cds. 11/11 None
SNAP00000016986 ENSEMBL cdna:SNAP chromosome:CEL140:V:599753:602164:1 11/11 None
GENEFINDER00000016998 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:600424:602164:1 11/11 None
ZK488.4 ENSEMBL cdna:known chromosome:CEL140:V:600424:602164:1 gene:ZK488.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:600423-602164(+) 100.0 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Gene Symbol nhr-251
Ensembl ZK488.4
Entrez Gene 191329 Entrez gene
SwissProt O17020 EMBL-EBI
WormBase CE15357 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB69951 Hypothetical protein ZK488.4 [Caenorhabditis elegans] ref|NP_503258.1| ZK488.4 [Caenorhabditis elegans] 1.0E-179
blast AAB69951 Hypothetical protein ZK488.4 [Caenorhabditis elegans] ref|NP_503258.1| ZK488.4 [Caenorhabditis elegans] 1.0E-161
blast AAB94262 Hypothetical protein C14C6.4 [Caenorhabditis elegans] ref|NP_503239.1| C14C6.4 [Caenorhabditis elegans] 1.0E-128
blast AAB94262 Hypothetical protein C14C6.4 [Caenorhabditis elegans] ref|NP_503239.1| C14C6.4 [Caenorhabditis elegans] 1.0E-114
blast CAE62521 Hypothetical protein CBG06626 [Caenorhabditis briggsae] 4.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 4.3E-15
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.3E-7
Sequence
Target Sequence 
>C. ELEGANS:189947_AT
gcatgcatgaattgcccaggcgttgatattttgagacagcgagatgttgaagtcattctc
aaatcgtttcattttgcaaatgtttggatggactccatttgggcgtattctaggcacaac
gagtctattgtgaataagttttttgaaaataatggaccattatccatgttcattaatcaa
ataaaatccactctcggctcttcactttctcaattaacgtttaatatttacgagttttcg
gctctaaaagctttctgcgtctggaaacttagctaccatgactcaacgatatcaattaac
attatggcagaagagcaatatattggaatttgctcagcgctacgaaagcattatgaggca
actacaaacatgaccgacgtagatattgcaatgagaattgctgaaatcacattgcaaatt
gtgccagctacgacgatttaccagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATGCATGAATTGCCCAGGCGTTG 556 309 553 Antisense
GAAGTCATTCTCAAATCGTTTCATT 85 337 601 Antisense
GATGGACTCCATTTGGGCGTATTCT 354 407 639 Antisense
GGGCGTATTCTAGGCACAACGAGTC 46 493 653 Antisense
CAAATAAAATCCACTCTCGGCTCTT 446 191 730 Antisense
GTTTTCGGCTCTAAAAGCTTTCTGC 142 449 786 Antisense
AGCTTTCTGCGTCTGGAAACTTAGC 291 79 801 Antisense
GAAACTTAGCTACCATGACTCAACG 271 357 816 Antisense
GGAATTTGCTCAGCGCTACGAAAGC 557 533 877 Antisense
GAGGCAACTACAAACATGACCGACG 515 405 907 Antisense
GTGCCAGCTACGACGATTTACCAGG 548 477 973 Antisense
Sequence Source Affymetrix Proprietary Database