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[189944_at] Glucose transporter

Description F48E3.2 /REP_DB=WormBase Gene ID /WP=CE02750 /TR=Q9GPA2 /GB=AAF99953.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Glucose transporter
Cluster 6grp_high1_10_10 > 51      6grp_total > 62      4grp_total > 46      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 81
1 2 3 4 range
A 74.3
(3)
M 		26.7
(-2.2)
A 		19.2
(-3)
A 		30.8
(-1.7)
A 		55
B 67.6
(3)
P 		36.5
(0.1)
A 		13
(-2.2)
A 		4
(-3)
A 		64
C 84.7
(3)
P 		30.8
(-2.5)
A 		37.8
(-1.8)
A 		25.7
(-3)
A 		59
avr 75.5
(3) 		31.3
(-1.8) 		23.3
(-2.7) 		20.2
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 65.2
(-3)
P 		166.2
(-0)
P 		269.5
(3)
P 		164.8
(-0.1)
P 		107.6
(-1.8)
P 		70.6
(-2.8)
A 		204
B 162.8
(1.1)
P 		155.4
(0.7)
P 		154.4
(0.7)
P 		204.6
(3)
P 		150.6
(0.5)
P 		74.5
(-3)
P 		130
C 142.1
(-1)
P 		202
(2.6)
P 		209.5
(3)
P 		165.7
(0.4)
P 		142
(-1)
P 		109.4
(-3)
M 		100
avr 123.4
(-1.2) 		174.5
(1.3) 		211.1
(3) 		178.4
(1.4) 		133.4
(-0.7) 		84.8
(-3) 		126
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 27.1
(3)
M 		5.8
(-2.7)
A 		5
(-2.9)
A 		4.5
(-3)
A 		23
B 21.5
(3)
P 		9
(-0.6)
A 		3
(-2.4)
A 		0.8
(-3)
A 		21
C 28
(3)
P 		8.9
(-1.8)
A 		13.2
(-0.7)
A 		4.3
(-3)
A 		24
avr 25.5
(3) 		7.9
(-1.7) 		7.1
(-2) 		3.2
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 12
(-3)
P 		59.1
(3)
P 		58.7
(2.9)
P 		41.8
(0.8)
P 		32.5
(-0.4)
P 		17.2
(-2.3)
A 		47
B 56.6
(2.2)
P 		51.7
(1.3)
P 		37.5
(-1.3)
P 		54.2
(1.7)
P 		61.2
(3)
P 		27.8
(-3)
P 		33
C 52.7
(1.1)
P 		61.6
(3)
P 		53.3
(1.2)
P 		33.3
(-3)
P 		45.9
(-0.3)
P 		36.6
(-2.3)
M 		28
avr 40.4
(-0.4) 		57.5
(3) 		49.8
(1.5) 		43.1
(0.1) 		46.5
(0.8) 		27.2
(-3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189944_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17012
Sequence Type Exemplar sequence
Representative Public ID F48E3.2 NCBI
Target Description F48E3.2 /REP_DB=WormBase Gene ID /WP=CE02750 /TR=Q9GPA2 /GB=AAF99953.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=Glucose transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076865(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076865 NCBI Caenorhabditis elegans F48E3.2 (F48E3.2) mRNA, complete cds. 11/11 None
SNAP00000040270 ENSEMBL cdna:SNAP chromosome:CEL140:X:7490386:7492913:-1 11/11 None
GENEFINDER00000040283 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:7490649:7493030:-1 11/11 None
F48E3.2 ENSEMBL cdna:known chromosome:CEL140:X:7490359:7493065:-1 gene:F48E3.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7490384-7493029(-) 100.0 100.0
Public Domain and Genome References
Gene Title Glucose transporter
Ensembl F48E3.2
Entrez Gene 185981 Entrez gene
SwissProt Q9GPA2 EMBL-EBI
WormBase CE02750 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF99953 Hypothetical protein F48E3.2 [Caenorhabditis elegans] ref|NP_509266.1| F48E3.2 [Caenorhabditis elegans] 0.0
blast CAE70221 Hypothetical protein CBG16701 [Caenorhabditis briggsae] 0.0
blast CAA91409 Hypothetical protein F14E5.1 [Caenorhabditis elegans] emb|CAA91392.2| Hypothetical protein F14E5.1 [Caenorhabditis elegans] ref|NP_495772.2| F14E5.1 [Caenorhabditis elegans] 2.0E-58
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 2.3E-27
Pfam IPR005828 EMBL-EBI General substrate transporter 2.7E-26
Pfam IPR005828 EMBL-EBI General substrate transporter 5.1E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509266.1 12 7-29,60-82,89-111,117-139,152-174,178-200,267-289,304-324,331-353,357-379,400-422,427-449
F48E3.2 12 7-29,60-82,89-111,117-139,152-174,178-200,267-289,304-324,331-353,357-379,400-422,427-449
SNAP00000040270 11 38-60,67-89,95-117,130-152,156-178,245-267,282-302,309-331,335-357,378-400,405-427
GENEFINDER00000040283 11 7-29,60-82,89-111,117-139,152-174,178-200,267-289,304-324,331-353,357-379,400-422
Sequence
Target Sequence 
>C. ELEGANS:189944_AT
tatggcctgttgtgttttactctaccgactttctcatggatgcaggattctcatacgaac
tttcggaaagtgtatcaacaggaatgttgtttttgagctcgttgagcacaattgttggaa
tgttcatcgtcgaaaaatattcacgaaaatggctcctaattgggacggccagtgtaaata
tcgcagctattttagtattctcacttagcgcaattttgtcacattattggacttggatag
gatacggatgtatcatttgtcttatacttcatggaatttcttatagtgttgcaatgggac
cgattgcttggttcattacttctgaactggtacctatcaacttccgtgcagcatcgcaat
ccctggttcttgctcttaaccacacagttgcattagttttagcttttctgacatttcctc
tttacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATGGCCTGTTGTGTTTTACTCTAC 305 655 854 Antisense
TTTACTCTACCGACTTTCTCATGGA 351 673 869 Antisense
GCAGGATTCTCATACGAACTTTCGG 612 307 895 Antisense
GGAATGTTGTTTTTGAGCTCGTTGA 503 531 934 Antisense
ATGGCTCCTAATTGGGACGGCCAGT 101 47 1002 Antisense
GACGGCCAGTGTAAATATCGCAGCT 184 377 1017 Antisense
TTCTCACTTAGCGCAATTTTGTCAC 381 683 1051 Antisense
CCGATTGCTTGGTTCATTACTTCTG 683 261 1153 Antisense
TGAACTGGTACCTATCAACTTCCGT 552 571 1176 Antisense
TTCTTGCTCTTAACCACACAGTTGC 363 689 1220 Antisense
CTTTTCTGACATTTCCTCTTTACAA 207 223 1256 Antisense
Sequence Source Affymetrix Proprietary Database