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[189943_at] transcription factor

Description K08F8.2 /REP_DB=WormBase Gene ID /WP=CE03468 /TR=Q21361 /GB=CAA91284.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=transcription factor
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 09      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 71      6grp_total > 90      4grp_total > 49      6grp_cgc > 96      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 418
1 2 3 4 range
A 104.1
(-3)
P 		425.6
(1.7)
P 		518.9
(3)
P 		122.3
(-2.7)
P 		415
B 101.1
(-3)
P 		486.9
(3)
P 		420.9
(2)
P 		112
(-2.8)
P 		386
C 122
(-3)
P 		506.5
(3)
P 		419.4
(1.6)
P 		152.6
(-2.5)
P 		385
avr 109.1
(-3) 		473
(3) 		453.1
(2.7) 		129
(-2.7) 		364

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 367
1 2 3 4 5 6 range
A 521.5
(3)
P 		316.5
(-1.4)
P 		241.4
(-3)
P 		426.4
(1)
P 		409.3
(0.6)
P 		279.8
(-2.2)
P 		280
B 340.9
(0.2)
P 		354.4
(0.4)
P 		154.7
(-3)
P 		508.1
(3)
P 		336.8
(0.1)
P 		275.1
(-1)
P 		353
C 280.8
(-1.2)
P 		450.5
(3)
P 		222.8
(-2.6)
P 		389.8
(1.5)
P 		364.8
(0.9)
P 		206.3
(-3)
P 		244
avr 381.1
(1.5) 		373.8
(1.3) 		206.3
(-3) 		441.4
(3) 		370.3
(1.2) 		253.7
(-1.8) 		235
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 37.9
(-2)
P 		92.4
(0.8)
P 		135.7
(3)
P 		17.9
(-3)
P 		118
B 32.2
(-2.5)
P 		120.3
(3)
P 		97.5
(1.6)
P 		23.9
(-3)
P 		96
C 40.4
(-2.3)
P 		145.6
(3)
P 		146.2
(3)
P 		25.7
(-3)
P 		121
avr 36.8
(-2.2) 		119.4
(2.6) 		126.5
(3) 		22.5
(-3) 		104

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 96.1
(0.7)
P 		112.6
(2.1)
P 		52.6
(-3)
P 		108.1
(1.7)
P 		123.5
(3)
P 		68.1
(-1.7)
P 		71
B 118.6
(1.9)
P 		118
(1.9)
P 		37.6
(-3)
P 		134.6
(2.9)
P 		136.8
(3)
P 		102.6
(0.9)
P 		99
C 104.1
(0.5)
P 		137.5
(3)
P 		56.7
(-3)
P 		78.4
(-1.4)
P 		118
(1.6)
P 		69.1
(-2.1)
P 		81
avr 106.3
(1.5) 		122.7
(2.7) 		49
(-3) 		107
(1.5) 		126.1
(3) 		79.9
(-0.6) 		77
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189943_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2660
Sequence Type Exemplar sequence
Representative Public ID K08F8.2 NCBI
Target Description K08F8.2 /REP_DB=WormBase Gene ID /WP=CE03468 /TR=Q21361 /GB=CAA91284.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=transcription factor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063460(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063460 NCBI Caenorhabditis elegans ATF (cAMP-dependent transciption factor) family member (atf-2) (atf-2) mRNA, complete cds. 11/11 None
SNAP00000029905 ENSEMBL cdna:SNAP chromosome:CEL140:II:8751906:8753658:1 11/11 None
GENEFINDER00000029915 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8751906:8753658:1 11/11 None
K08F8.2 ENSEMBL cdna:known chromosome:CEL140:II:8751906:8753859:1 gene:K08F8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8751902-8753655(+) 100.0 100.0
Public Domain and Genome References
Gene Title transcription factor
Gene Symbol atf-2
Ensembl K08F8.2
Entrez Gene 174399 Entrez gene
SwissProt Q21361 EMBL-EBI
WormBase CE03468 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3677 DNA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91284 Hypothetical protein K08F8.2 [Caenorhabditis elegans] ref|NP_495861.1| ATF (cAMP-dependent transciption factor) family member (atf-2) [Caenorhabditis elegans] 1.0E-154
blast CAE59718 Hypothetical protein CBG03150 [Caenorhabditis briggsae] 1.0E-126
Protein Domains
Database ID Description E-Value
Pfam IPR004827 EMBL-EBI Basic-leucine zipper (bZIP) transcription factor 9.6E-8
Sequence
Target Sequence 
>C. ELEGANS:189943_AT
agcagagttttccatcgagtagcgtaattgtgaaaattgaacgaagaagtccagattcat
caactgacgtgaatatgcctcaacctcagttacagcctggatctagcgttattcaacaaa
tcggtcagcctgctccatcaggtacgcctcaaccagtaatccaagctgttcaacaaggac
catccctgctatctgctcttctttcacagcgaagaccttctcctacagtaccacaaagcc
gaacggaacatatttcggggctaaattcccctccaagacatactggaaacaaatcagact
gtgaaagtgtatcgtcttcagcatctttctctccatcgcattcttcggaagatcactcaa
attattcgaacaaatcgccccaatatgtggacagacgtcgaaggaacaatgaagccgcaa
aaagatgtagagcaaatagacgagcagtattcgaatacaggtcacgacgagttcagctct
tgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAGAGTTTTCCATCGAGTAGCGT 296 77 623 Antisense
GTGAATATGCCTCAACCTCAGTTAC 127 481 691 Antisense
TACAGCCTGGATCTAGCGTTATTCA 360 641 713 Antisense
TACGCCTCAACCAGTAATCCAAGCT 115 649 765 Antisense
TTCAACAAGGACCATCCCTGCTATC 569 685 791 Antisense
TATCTGCTCTTCTTTCACAGCGAAG 427 659 812 Antisense
TTCACAGCGAAGACCTTCTCCTACA 107 687 825 Antisense
TAAATTCCCCTCCAAGACATACTGG 30 641 884 Antisense
AAGTGTATCGTCTTCAGCATCTTTC 364 159 927 Antisense
TCTCTCCATCGCATTCTTCGGAAGA 130 613 950 Antisense
GGTCACGACGAGTTCAGCTCTTGGA 32 505 1082 Antisense
Sequence Source Affymetrix Proprietary Database