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[189942_at]

Description T08B6.5 /REP_DB=WormBase Gene ID /WP=CE17226 /TR=O44530 /GB=AAB94155.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=RNA binding protein
Cluster 6grp_total > 88      4grp_total > 43      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 7.5
(-2.8)
A 		50.5
(3)
A 		5.9
(-3)
A 		24.7
(-0.5)
A 		45
B 29.6
(3)
A 		12.8
(-1.9)
A 		23.2
(1.1)
A 		9.2
(-3)
A 		20
C 8
(-2.4)
A 		7.1
(-3)
A 		16.1
(3)
A 		14.9
(2.2)
A 		9
avr 15
(-3) 		23.5
(3) 		15.1
(-2.9) 		16.3
(-2.1) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 32.1
(-2.3)
A 		13.8
(-2.9)
A 		43.1
(-1.9)
A 		10.1
(-3)
A 		106.9
(0.3)
A 		187.4
(3)
P 		177
B 2.4
(-3)
A 		7
(-2.8)
A 		20.2
(-2.3)
A 		27.3
(-2)
A 		108.8
(1.3)
A 		152.1
(3)
P 		150
C 7.1
(-3)
A 		36.5
(-1.8)
A 		6.4
(-3)
A 		45.7
(-1.5)
A 		65.7
(-0.7)
A 		162.3
(3)
P 		156
avr 13.9
(-3) 		19.1
(-2.8) 		23.2
(-2.6) 		27.7
(-2.5) 		93.8
(0.1) 		167.3
(3) 		153
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.7
(-2.2)
A 		11
(3)
A 		1.5
(-3)
A 		3.6
(-1.7)
A 		10
B 9.4
(3)
A 		3.2
(-2)
A 		5.4
(-0.2)
A 		2
(-3)
A 		7
C 2.7
(-1.8)
A 		2
(-3)
A 		5.6
(3)
A 		2.5
(-2.2)
A 		4
avr 4.9
(1.9) 		5.4
(3) 		4.2
(0.3) 		2.7
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 5.9
(-2.5)
A 		4.9
(-2.7)
A 		9.4
(-2.1)
A 		2.6
(-3)
A 		32.3
(1.1)
A 		45.6
(3)
P 		43
B 0.8
(-3)
A 		2.3
(-2.8)
A 		4.9
(-2.6)
A 		7.2
(-2.3)
A 		44.2
(1.7)
A 		56.7
(3)
P 		56
C 2.6
(-2.9)
A 		11.1
(-1.9)
A 		1.6
(-3)
A 		9.2
(-2.1)
A 		21.3
(-0.8)
A 		54.3
(3)
P 		53
avr 3.1
(-3) 		6.1
(-2.6) 		5.3
(-2.7) 		6.3
(-2.6) 		32.6
(0.6) 		52.2
(3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189942_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11184
Sequence Type Exemplar sequence
Representative Public ID T08B6.5 NCBI
Target Description T08B6.5 /REP_DB=WormBase Gene ID /WP=CE17226 /TR=O44530 /GB=AAB94155.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=RNA binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028195(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028195 NCBI Caenorhabditis elegans T08B6.9 (T08B6.9) mRNA, complete cds. 11/11 None
SNAP00000024943 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4890851:4894031:1 9/11 None
GENEFINDER00000024947 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4890851:4894031:1 11/11 None
T08B6.9 ENSEMBL cdna:known chromosome:CEL140:IV:4890851:4894031:1 gene:T08B6.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4889924-4894037(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T08B6.9
Entrez Gene 3564899 Entrez gene
SwissProt Q86MH6 EMBL-EBI
WormBase CE33691 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001023366 T08B6.9 [Caenorhabditis elegans] gb|AAO91700.1| Hypothetical protein T08B6.9 [Caenorhabditis elegans] 0.0
blast CAB61154 Hypothetical protein Y51H4A.22 [Caenorhabditis elegans] ref|NP_502979.2| Y51H4A.22 [Caenorhabditis elegans] 6.0E-65
blast CAB07565 Hypothetical protein C38C6.5 [Caenorhabditis elegans] ref|NP_497040.2| C38C6.5 [Caenorhabditis elegans] 3.0E-62
Sequence
Target Sequence 
>C. ELEGANS:189942_AT
aagtggtacatcacgggtctcgagttcttgtgtcccccaacaattaccgattatatggat
ctgtctctgctagcatatcgtgaagtggtagctgaaaagttcttattgtctttgaatagt
caggttgaacctgtaaaatggtattcttcgatggaatttttgagatatttcaccaagtat
ggagaatttacatctgaaacttgtaatactggagaagttgtgactaaagatgatttgaaa
aatctcgagacttcaatgttttcatccgacgccttgtacaacattactattcataaatac
aagattgactacacagacattccactaccagccaccgaaacaacacacttcaaaatggga
actcgcgcaaaaggatattatagcactgctggcatcaactgtaactggcatcaacttgat
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTGGTACATCACGGGTCTCGAGT 404 159 1642 Antisense
ATCACGGGTCTCGAGTTCTTGTGTC 470 27 1651 Antisense
GTCCCCCAACAATTACCGATTATAT 188 475 1673 Antisense
GGATCTGTCTCTGCTAGCATATCGT 266 511 1698 Antisense
GACTTCAATGTTTTCATCCGACGCC 46 373 1890 Antisense
TCATCCGACGCCTTGTACAACATTA 102 623 1903 Antisense
TGACTACACAGACATTCCACTACCA 438 571 1947 Antisense
GCCACCGAAACAACACACTTCAAAA 495 279 1972 Antisense
AAATGGGAACTCGCGCAAAAGGATA 158 117 1994 Antisense
AGCACTGCTGGCATCAACTGTAACT 23 77 2023 Antisense
AACTGTAACTGGCATCAACTTGATT 237 143 2038 Antisense
Sequence Source Affymetrix Proprietary Database