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[189941_at]

Description C06G3.5 /REP_DB=WormBase Gene ID /WP=CE26867 /TR=Q17747 /GB=AAB03130.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=adeonsine deaminase
Cluster 6grp_highest_10_10 > 73      6grp_high1_10_10 > 37      4grp_highest_8_8 > 45      4grp_high_8_8 > 09      6grp_highest_nonorm > 67      6grp_total > 37      4grp_total > 22      6grp_highest_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1849
1 2 3 4 range
A 3195.4
(3)
P 		1733.5
(-3)
P 		1727.6
(-3)
P 		2962.7
(2)
P 		1468
B 3185.8
(3)
P 		2018.8
(-3)
P 		2107.9
(-2.5)
P 		3168.2
(2.9)
P 		1167
C 3576.3
(3)
P 		1844.6
(-2.9)
P 		1805.9
(-3)
P 		3572.6
(3)
P 		1770
avr 3319.2
(3) 		1865.6
(-3) 		1880.5
(-2.9) 		3234.5
(2.7) 		1454

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 755
1 2 3 4 5 6 range
A 2164
(3)
P 		1820
(-0.1)
P 		1668.2
(-1.5)
P 		1505.5
(-3)
P 		1518.6
(-2.9)
P 		1722.3
(-1)
P 		659
B 2146.4
(3)
P 		1834.5
(0)
P 		1811.1
(-0.2)
P 		1515.2
(-3)
P 		1633.7
(-1.9)
P 		1964.4
(1.3)
P 		631
C 2128.1
(3)
P 		1840.1
(0.6)
P 		1452.4
(-2.6)
P 		1526.2
(-2)
P 		1409.5
(-3)
P 		2096.7
(2.7)
P 		719
avr 2146.2
(3) 		1831.5
(0) 		1643.9
(-1.8) 		1515.6
(-3) 		1520.6
(-3) 		1927.8
(0.9) 		631
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 808
1 2 3 4 range
A 1163.4
(3)
P 		376.3
(-3)
P 		451.6
(-2.4)
P 		433.7
(-2.6)
P 		787
B 1015.9
(3)
P 		498.6
(-2.9)
P 		488.4
(-3)
P 		675.1
(-0.9)
P 		528
C 1183.9
(3)
P 		530.3
(-3)
P 		629.4
(-2.1)
P 		602.4
(-2.3)
P 		654
avr 1121.1
(3) 		468.4
(-3) 		523.1
(-2.5) 		570.4
(-2.1) 		653

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 482
1 2 3 4 5 6 range
A 398.9
(-2.2)
P 		647.3
(3)
P 		363.3
(-3)
P 		381.8
(-2.6)
P 		458.2
(-1)
P 		419.3
(-1.8)
P 		284
B 746.8
(3)
P 		610.6
(0.6)
P 		439.8
(-2.3)
P 		401.3
(-3)
P 		663.8
(1.6)
P 		732.5
(2.8)
P 		346
C 788.8
(3)
P 		561.5
(0.2)
P 		369.7
(-2.2)
P 		306.9
(-3)
P 		456.1
(-1.1)
P 		701.9
(1.9)
P 		482
avr 644.8
(3) 		606.5
(2.2) 		390.9
(-2.4) 		363.3
(-3) 		526
(0.5) 		617.9
(2.4) 		282
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189941_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9143
Sequence Type Exemplar sequence
Representative Public ID C06G3.5 NCBI
Target Description C06G3.5 /REP_DB=WormBase Gene ID /WP=CE26867 /TR=Q17747 /GB=AAB03130.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=adeonsine deaminase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068686(11), NM_182291(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068686 NCBI Caenorhabditis elegans C06G3.5a (C06G3.5) mRNA, complete cds. 11/11 None
NM_182291 NCBI Caenorhabditis elegans C06G3.5b (C06G3.5) mRNA, complete cds. 11/11 None
SNAP00000008736 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7026307:7027985:1 11/11 None
GENEFINDER00000008756 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7024227:7027985:1 11/11 None
C06G3.5a.2 ENSEMBL cdna:known chromosome:CEL140:IV:7024193:7028105:1 gene:C06G3.5 11/11 None
C06G3.5a.1 ENSEMBL cdna:known chromosome:CEL140:IV:7024195:7028105:1 gene:C06G3.5 11/11 None
C06G3.5b ENSEMBL cdna:known chromosome:CEL140:IV:7026456:7027985:1 gene:C06G3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7026504-7027991(+) 100.0 100.0
Public Domain and Genome References
Ensembl C06G3.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB03130 Hypothetical protein C06G3.5a [Caenorhabditis elegans] ref|NP_501087.1| C06G3.5a [Caenorhabditis elegans] 0.0
blast CAE61787 Hypothetical protein CBG05749 [Caenorhabditis briggsae] 0.0
blast AAO44914 Hypothetical protein C06G3.5b [Caenorhabditis elegans] ref|NP_872091.1| C06G3.5b [Caenorhabditis elegans] pir||T30093 hypothetical protein C06G3.5 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001365 EMBL-EBI Adenosine/AMP deaminase 1.0E-126
Pfam IPR001365 EMBL-EBI Adenosine/AMP deaminase 1.0E-126
Pfam IPR001365 EMBL-EBI Adenosine/AMP deaminase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:189941_AT
attctttgctgtattcgtggactagacaaaaagttcccacaattgattctcgatttggca
actgacttgaaacaactcggagttgtcgcgattgatgttgctggatcagctcacggagcc
gatgaacagtacgagccagaagtcgttgctgctttccaagaagcacacaaacgaggaatt
catagaactgttcatgctggagagtctggtggtccaaaggaagttattaaagctattgaa
gatatgtatgcagagagaattggacatggttatagagtaatgagagatgaagaaatgtat
ttggagcattttgtaaactcaaagaatgttcatttggaagcttgtccatattcatctgta
atgactggtgctgttccattggattggaagaatcatccaattgcacgatgggctaaagat
gatgttaatttctctgtatctcgtgatgatccaacatgttttgataattcgatgctcagt
gaattgacacttgttcataagcagatcggattggatgtacatcaactgtggaaagcgcaa
cttaacgctgcccgttcttgtttccttcctgaagacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCTTTGCTGTATTCGTGGACTAG 302 11 433 Antisense
AAGTTCCCACAATTGATTCTCGATT 185 157 463 Antisense
GATTCTCGATTTGGCAACTGACTTG 13 431 477 Antisense
GAGTTGTCGCGATTGATGTTGCTGG 436 397 512 Antisense
GAGCCGATGAACAGTACGAGCCAGA 362 385 548 Antisense
AAGTCGTTGCTGCTTTCCAAGAAGC 24 159 572 Antisense
GGAAGCTTGTCCATATTCATCTGTA 387 531 768 Antisense
GACTGGTGCTGTTCCATTGGATTGG 68 377 795 Antisense
GTTAATTTCTCTGTATCTCGTGATG 519 445 856 Antisense
AAAGCGCAACTTAACGCTGCCCGTT 120 125 964 Antisense
GTTCTTGTTTCCTTCCTGAAGACGA 302 443 986 Antisense
Sequence Source Affymetrix Proprietary Database