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[189940_at] zinc finger protein

Description ZC328.2 /REP_DB=WormBase Gene ID /WP=CE15183 /TR=O02050 /GB=AAK39376.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 12      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_highest_nonorm > 60      6grp_total > 23      4grp_total > 38      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 626
1 2 3 4 range
A 686.5
(3)
P 		447
(-0.1)
P 		225.5
(-3)
P 		466.7
(0.1)
P 		461
B 793.6
(3)
P 		324.6
(-2.6)
P 		293.3
(-3)
P 		460.1
(-1)
P 		500
C 851.7
(3)
P 		429
(-1.2)
P 		249.2
(-3)
P 		504.1
(-0.5)
P 		603
avr 777.3
(3) 		400.2
(-1.3) 		256
(-3) 		477
(-0.5) 		521

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 419
1 2 3 4 5 6 range
A 397.5
(0.6)
P 		541.3
(3)
P 		503.3
(2.4)
P 		330.7
(-0.5)
P 		201.8
(-2.6)
P 		179.2
(-3)
P 		362
B 552.9
(2.9)
P 		515.5
(2.4)
P 		560.9
(3)
P 		264.5
(-1.2)
P 		257
(-1.3)
P 		141.6
(-3)
P 		419
C 458
(2)
P 		507.4
(3)
P 		348.4
(-0.2)
P 		291.1
(-1.3)
P 		218
(-2.8)
P 		207.1
(-3)
P 		300
avr 469.5
(2.1) 		521.4
(3) 		470.9
(2.1) 		295.4
(-0.9) 		225.6
(-2.1) 		176
(-3) 		345
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 223
1 2 3 4 range
A 250
(3)
P 		97
(-1.8)
P 		58.9
(-3)
P 		68.3
(-2.7)
P 		191
B 253.1
(3)
P 		80.2
(-2.6)
P 		68
(-3)
P 		98
(-2)
P 		185
C 281.9
(3)
P 		123.3
(-1.8)
P 		86.9
(-2.9)
P 		85
(-3)
P 		197
avr 261.7
(3) 		100.2
(-2.1) 		71.3
(-3) 		83.8
(-2.6) 		190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 73.3
(-1.8)
P 		192.5
(3)
P 		109.6
(-0.3)
P 		83.9
(-1.4)
P 		60.9
(-2.3)
P 		43.6
(-3)
P 		149
B 192.4
(3)
P 		171.6
(2.1)
P 		136.2
(0.6)
P 		70
(-2.3)
P 		104.4
(-0.8)
P 		52.8
(-3)
P 		140
C 169.8
(3)
P 		154.8
(2.2)
P 		88.7
(-1.4)
P 		58.5
(-3)
P 		70.6
(-2.3)
P 		69.3
(-2.4)
P 		111
avr 145.2
(1.6) 		173
(3) 		111.5
(-0.1) 		70.8
(-2.2) 		78.6
(-1.8) 		55.2
(-3) 		118
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189940_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.949
Sequence Type Exemplar sequence
Representative Public ID ZC328.2 NCBI
Target Description ZC328.2 /REP_DB=WormBase Gene ID /WP=CE15183 /TR=O02050 /GB=AAK39376.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059442(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059442 NCBI Caenorhabditis elegans ZC328.2 (ZC328.2) mRNA, complete cds. 10/11 None
SNAP00000023529 ENSEMBL cdna:SNAP chromosome:CEL140:I:6394511:6397228:-1 10/11 None
GENEFINDER00000023536 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6394532:6399074:-1 10/11 None
ZC328.2 ENSEMBL cdna:known chromosome:CEL140:I:6394303:6400659:-1 gene:ZC328.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6394439-6398105(-) 96.74 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Ensembl ZC328.2
Entrez Gene 172339 Entrez gene
SwissProt O02050 EMBL-EBI
WormBase CE39078 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_491843 ZC328.2 [Caenorhabditis elegans] 0.0
blast T15127 hypothetical protein ZC328.2 - Caenorhabditis elegans 1.0E-178
blast AAK39376 Hypothetical protein ZC328.2 [Caenorhabditis elegans] 1.0E-175
blast NP_491843 ZC328.2 [Caenorhabditis elegans] 1.0E-162
blast AAK39376 Hypothetical protein ZC328.2 [Caenorhabditis elegans] 1.0E-154
blast T15127 hypothetical protein ZC328.2 - Caenorhabditis elegans 1.0E-138
blast AAK39376 Hypothetical protein ZC328.2 [Caenorhabditis elegans] 1.0E-132
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.6E-7
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.6E-7
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.6E-7
Sequence
Target Sequence 
>C. ELEGANS:189940_AT
gatccgttgaatcgacttctggaacagctgatggatcggctccgggacaatactattgtt
ttatttgcgagaaagattttcgtcgtcctgatattctatcaagacatactcgaaggcata
ccggagagaaaccatttaaatgtgaagattgtggacgatttttctcaagatctgatcatt
tgcgaactcatcggagaactcatactgatgagaaaccatatcattgttgtgtttgtaatt
attcggctaatacaattattatttccatgttgatgaaaaattggaaggaaataaataaat
atatatatttgaaaaaacaagttttgaaattttataaaatttcgaaaattgtcaattttc
aaatattttcaatcattctagaaattcatccaaattttcagagacggcgtgacgttctca
cacgtcacatgtcgacaaggcaccaagcaattgctccaccatcaattcttggaacacaca
gaaatgtgagaagatgcttatcggatggtgattaccataaaatggctgcacaagaacttc
ggcaacgtcatcaagcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCCGTTGAATCGACTTCTGGAAC 73 417 1043 Antisense
GGATCGGCTCCGGGACAATACTATT 504 507 1075 Antisense
GATTTTCGTCGTCCTGATATTCTAT 477 429 1117 Antisense
AAGACATACTCGAAGGCATACCGGA 395 153 1143 Antisense
GTGGACGATTTTTCTCAAGATCTGA 390 491 1193 Antisense
GCGAACTCATCGGAGAACTCATACT 475 289 1224 Antisense
TCAGAGACGGCGTGACGTTCTCACA 287 623 1440 Antisense
GTTCTCACACGTCACATGTCGACAA 441 443 1456 Antisense
GACAAGGCACCAAGCAATTGCTCCA 407 365 1476 Antisense
GATGCTTATCGGATGGTGATTACCA 78 413 1535 Antisense
GAACTTCGGCAACGTCATCAAGCAA 207 351 1576 Antisense
Sequence Source Affymetrix Proprietary Database