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[189935_at] G-protein receptor

Description T10E10.3 /REP_DB=WormBase Gene ID /WP=CE02872 /TR=Q22377 /GB=AAA80359.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=G-protein receptor
Cluster 6grp_total > 12      4grp_total > 30      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 138
1 2 3 4 range
A 182.6
(3)
P 		60
(-2.3)
A 		45
(-3)
A 		150
(1.6)
P 		138
B 163.9
(3)
P 		110.9
(0)
A 		57.1
(-3)
A 		129.3
(1.1)
P 		107
C 138.7
(3)
P 		89.4
(-0.5)
A 		53.8
(-3)
A 		130.2
(2.4)
P 		85
avr 161.7
(3) 		86.8
(-1.1) 		52
(-3) 		136.5
(1.6) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 122
1 2 3 4 5 6 range
A 100.2
(1.7)
A 		111.1
(3)
P 		107.3
(2.5)
A 		83.7
(-0.3)
A 		98.9
(1.5)
P 		61.3
(-3)
A 		50
B 87.7
(0.4)
P 		121.6
(3)
P 		96.2
(1)
P 		43.5
(-3)
A 		69.2
(-1)
A 		76.2
(-0.5)
A 		78
C 87.9
(-0.8)
A 		164.4
(3)
P 		52.7
(-2.5)
A 		98
(-0.3)
A 		49.2
(-2.7)
A 		42.5
(-3)
A 		122
avr 91.9
(-0.4) 		132.4
(3) 		85.4
(-0.9) 		75.1
(-1.7) 		72.4
(-2) 		60
(-3) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 66.5
(3)
P 		13
(-2.9)
A 		11.8
(-3)
A 		22
(-1.9)
P 		55
B 52.3
(3)
P 		27.4
(-0.8)
A 		13.2
(-3)
A 		27.5
(-0.8)
P 		39
C 45.9
(3)
P 		25.7
(-1.5)
A 		18.7
(-3)
A 		22
(-2.3)
P 		27
avr 54.9
(3) 		22
(-1.9) 		14.6
(-3) 		23.8
(-1.6) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 18.5
(-2.1)
A 		39.5
(3)
P 		23.4
(-0.9)
A 		21.2
(-1.5)
A 		29.9
(0.7)
P 		14.9
(-3)
A 		25
B 30.5
(0.9)
P 		40.5
(3)
P 		23.4
(-0.5)
P 		11.5
(-3)
A 		28.1
(0.4)
A 		28.4
(0.5)
A 		29
C 32.6
(0.1)
A 		50.2
(3)
P 		13.4
(-3)
A 		19.7
(-2)
A 		15.9
(-2.6)
A 		14.2
(-2.9)
A 		37
avr 27.2
(-0.8) 		43.4
(3) 		20.1
(-2.4) 		17.5
(-3) 		24.6
(-1.4) 		19.2
(-2.6) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189935_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17300
Sequence Type Exemplar sequence
Representative Public ID T10E10.3 NCBI
Target Description T10E10.3 /REP_DB=WormBase Gene ID /WP=CE02872 /TR=Q22377 /GB=AAA80359.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=G-protein receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076656(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076656 NCBI Caenorhabditis elegans T10E10.3 (T10E10.3) mRNA, complete cds. 11/11 None
GENEFINDER00000029194 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6311650:6314048:1 11/11 None
SNAP00000029181 ENSEMBL cdna:SNAP chromosome:CEL140:X:6311959:6317213:1 9/11 None
T10E10.3 ENSEMBL cdna:known chromosome:CEL140:X:6311671:6314544:1 gene:T10E10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6311958-6314544(+) 96.59 100.0
Public Domain and Genome References
Gene Title G-protein receptor
Ensembl T10E10.3
Entrez Gene 188386 Entrez gene
SwissProt Q22377 EMBL-EBI
WormBase CE35766 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA80359 Hypothetical protein T10E10.3 [Caenorhabditis elegans] ref|NP_509057.2| T10E10.3 [Caenorhabditis elegans] 0.0
blast AAA80359 Hypothetical protein T10E10.3 [Caenorhabditis elegans] ref|NP_509057.2| T10E10.3 [Caenorhabditis elegans] 1.0E-160
blast CAE61235 Hypothetical protein CBG05035 [Caenorhabditis briggsae] 1.0E-131
blast CAE61235 Hypothetical protein CBG05035 [Caenorhabditis briggsae] 1.0E-128
blast CAE61235 Hypothetical protein CBG05035 [Caenorhabditis briggsae] 1.0E-100
blast AAB65319 Hypothetical protein F40A3.7 [Caenorhabditis elegans] ref|NP_505034.1| F40A3.7 [Caenorhabditis elegans] 4.0E-28
blast ABA03115 Hypothetical protein R13H7.2c [Caenorhabditis elegans] 3.0E-27
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509057.2 7 4-21,33-52,84-106,126-148,184-206,270-292,307-329
T10E10.3 7 4-21,33-52,84-106,126-148,184-206,270-292,307-329
GENEFINDER00000029194 8 15-37,49-68,100-122,142-164,200-222,286-308,323-345,390-412
SNAP00000029181 4 53-75,95-117,153-175,238-260
Sequence
Target Sequence 
>C. ELEGANS:189935_AT
atcttccacattctgatcccaatgattcttttaatatcatttcatacttgcttgctgtat
tatcttcgtaaccgatttaggcacttctttccggctcgaacaagaagtgcaagaaactcg
acaagatccgatgacgtccctgctccacttttatccaacgtaaccgatcgatcggaagta
gtgcgacatcattcttctaacagtggtgtttggaatcgccatgtgaacaaagccgaacgt
catgtaacttatacggtcatagcaattgtcacatgctacattgtttcacatattccatct
gcatgcctatatgtttacatcaacctgtttcataacgttctttactcaacaagatggatg
tacacaagtgttcaagtttccacaaccgttgtcacatgctccaaagttgcaaatttcata
cttttttgcatgagcagtaaacattttcgcaaagaaatgaaaaagaagttgtgctttctg
tcgtgcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTTCCACATTCTGATCCCAATGA 411 31 409 Antisense
ATATCATTTCATACTTGCTTGCTGT 129 21 442 Antisense
GCTTGCTGTATTATCTTCGTAACCG 412 305 458 Antisense
TAACCGATTTAGGCACTTCTTTCCG 555 637 477 Antisense
TCGACAAGATCCGATGACGTCCCTG 516 599 526 Antisense
AGTGCGACATCATTCTTCTAACAGT 427 59 588 Antisense
GTCACATGCTACATTGTTTCACATA 352 465 676 Antisense
GTTTCACATATTCCATCTGCATGCC 501 449 691 Antisense
TGTTCAAGTTTCCACAACCGTTGTC 423 559 777 Antisense
AACCGTTGTCACATGCTCCAAAGTT 667 145 792 Antisense
GAAGTTGTGCTTTCTGTCGTGCAAA 370 337 873 Antisense
Sequence Source Affymetrix Proprietary Database