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[189934_at] SOL/DEVB family

Description Y57G11C.3 /REP_DB=WormBase Gene ID /WP=CE24473 /TR=SW:O18229 /GB=CAB16505.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=SOL-DEVB family
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 80      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 64      6grp_total > 92      4grp_total > 60      6grp_highest_sub > 04_05      6grp_high1_sub > 02_03_04_05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 538
1 2 3 4 range
A 805.9
(0.3)
P 		635.2
(-2.3)
P 		986.9
(3)
P 		591.3
(-3)
P 		396
B 857.1
(1.3)
P 		851.9
(1.2)
P 		978.2
(3)
P 		555.7
(-3)
P 		423
C 858.1
(2.5)
P 		843.9
(2.4)
P 		891.7
(3)
P 		449.3
(-3)
P 		442
avr 840.4
(1.4) 		777
(0.5) 		952.3
(3) 		532.1
(-3) 		420

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 295
1 2 3 4 5 6 range
A 643.6
(-3)
P 		831.2
(1.9)
P 		722.6
(-1)
P 		875.4
(3)
P 		772.2
(0.3)
P 		816.2
(1.5)
P 		232
B 793.1
(-0.5)
P 		796.6
(-0.4)
P 		849.5
(0.9)
P 		767.1
(-1.2)
P 		935.3
(3)
P 		692.9
(-3)
P 		242
C 854.1
(3)
P 		707.1
(-1.1)
P 		816.1
(1.9)
P 		696.4
(-1.4)
P 		783.4
(1)
P 		640.4
(-3)
P 		214
avr 763.6
(-0.5) 		778.3
(0.3) 		796.1
(1.2) 		779.6
(0.3) 		830.3
(3) 		716.5
(-3) 		114
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 235
1 2 3 4 range
A 293.4
(3)
P 		137.9
(-1.5)
P 		258
(2)
P 		86.6
(-3)
P 		207
B 273.3
(3)
P 		210.4
(0.6)
P 		226.7
(1.2)
P 		118.4
(-3)
P 		155
C 284.1
(2.3)
P 		242.6
(1.3)
P 		310.8
(3)
P 		75.8
(-3)
P 		235
avr 283.6
(3) 		197
(0.3) 		265.2
(2.4) 		93.6
(-3) 		190

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 261
1 2 3 4 5 6 range
A 118.6
(-3)
P 		295.6
(3)
P 		157.4
(-1.7)
P 		222
(0.5)
P 		233
(0.9)
P 		198.7
(-0.3)
P 		177
B 276
(-0.5)
P 		265.2
(-0.9)
P 		206.3
(-2.9)
P 		203.2
(-3)
P 		380
(3)
P 		258.4
(-1.1)
P 		177
C 316.6
(3)
P 		215.8
(-0.4)
P 		207.7
(-0.7)
P 		140
(-3)
P 		253.5
(0.9)
P 		214.4
(-0.5)
P 		177
avr 237.1
(-0.1) 		258.9
(1.2) 		190.5
(-2.9) 		188.4
(-3) 		288.8
(3) 		223.8
(-0.9) 		100
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189934_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8415
Sequence Type Exemplar sequence
Representative Public ID Y57G11C.3 NCBI
Target Description Y57G11C.3 /REP_DB=WormBase Gene ID /WP=CE24473 /TR=SW:O18229 /GB=CAB16505.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=SOL-DEVB family
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070382(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070382 NCBI Caenorhabditis elegans Y57G11C.3 (Y57G11C.3) mRNA, complete cds. 11/11 None
SNAP00000003468 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14768252:14769025:1 11/11 None
GENEFINDER00000003569 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14768252:14769025:1 11/11 None
Y57G11C.3 ENSEMBL cdna:known chromosome:CEL140:IV:14768152:14769222:1 gene:Y57G11C.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14768168-14769031(+) 100.0 100.0
Public Domain and Genome References
Gene Title SOL/DEVB family
Ensembl Y57G11C.3
Entrez Gene 178398 Entrez gene
SwissProt O18229 EMBL-EBI
WormBase CE24473 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249729_AT glucosamine/galactosamine-6-phosphate isomerase-related at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
6098 pentose-phosphate shunt inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
17057 6-phosphogluconolactonase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB16505 Hypothetical protein Y57G11C.3 [Caenorhabditis elegans] ref|NP_502783.1| Y57G11C.3 [Caenorhabditis elegans] sp|O18229|6PGL_CAEEL Putative 6-phosphogluconolactonase (6PGL) 1.0E-143
blast F88904 protein Y57G11C.3 [imported] - Caenorhabditis elegans 1.0E-136
blast CAB16505 Hypothetical protein Y57G11C.3 [Caenorhabditis elegans] ref|NP_502783.1| Y57G11C.3 [Caenorhabditis elegans] sp|O18229|6PGL_CAEEL Putative 6-phosphogluconolactonase (6PGL) 1.0E-136
blast CAE73916 Hypothetical protein CBG21525 [Caenorhabditis briggsae] 6.0E-76
Protein Families
Method ID Description E-Value
ec 6PGL_DROME (Q9VZ64) Potential 6-phosphogluconolactonase (EC 3.1.1.31) (6PGL) 1.0E-104
ec 6PGL_DROME (Q9VZ64) Potential 6-phosphogluconolactonase (EC 3.1.1.31) (6PGL) 1.0E-105
Sequence
Target Sequence 
>C. ELEGANS:189934_AT
tcgaaagctattctctctttgccacaagagcagctgaattggaagaggattcgaattttt
atggttgatgagcgtaacgttgatctggatagcgaggaaagtaatcagggagaatatttg
agattattcccgaatgagctcagagacgtttttgtgcccatgcaaattttcaaggatccc
tgcctcaccgcccaacactatgaaatcagtcttcgtaaatacttgctcccggagcagctc
aacaatactgctcgtttcgatattcttttccttggagttggtccagatggtcacactgca
agtatcttccctggaaaggagcggctggagaagattaccgagctaaattgggtttccgtc
atcacagactccccgaaacctccaccatctcgtatcacacttactttgcaaactcttcaa
cacgccaaaaacgttgctttcatcatttgcgggaaacaaaaagcggaaattgtacgagga
atttgtgatcgtgatcaaaagtatccggccgctcaagcacgtccattcaacgacaaattg
acactattcctcgatgaagacgcagcaactggtgtaccggata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCGAAAGCTATTCTCTCTTTGCCAC 454 601 196 Antisense
GAGACGTTTTTGTGCCCATGCAAAT 118 393 338 Antisense
GCAAATTTTCAAGGATCCCTGCCTC 638 317 357 Antisense
CTTCGTAAATACTTGCTCCCGGAGC 451 219 406 Antisense
AGCTCAACAATACTGCTCGTTTCGA 208 79 431 Antisense
CTCGTTTCGATATTCTTTTCCTTGG 352 233 446 Antisense
GAGTTGGTCCAGATGGTCACACTGC 591 397 470 Antisense
CACTGCAAGTATCTTCCCTGGAAAG 399 195 489 Antisense
GCTAAATTGGGTTTCCGTCATCACA 6 303 537 Antisense
CCATCTCGTATCACACTTACTTTGC 611 269 580 Antisense
GACGCAGCAACTGGTGTACCGGATA 70 381 754 Antisense
Sequence Source Affymetrix Proprietary Database