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[189933_s_at]

Description H17B01.1A /REP_DB=WormBase Gene ID /WP=CE27184 /TR=O44826 /GB=AAK31539.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=sugar transporter
Cluster 6grp_highest_10_10 > 21      6grp_high1_10_10 > 04      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 41      6grp_total > 24      4grp_total > 52      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 574
1 2 3 4 range
A 977.6
(1.7)
P 		1071.2
(3)
P 		818.5
(-0.5)
P 		632.3
(-3)
P 		439
B 933.2
(3)
P 		927
(2.9)
P 		783.5
(0.1)
P 		625.4
(-3)
P 		308
C 936.9
(3)
P 		875.1
(2.2)
P 		856.7
(1.9)
P 		496.9
(-3)
P 		440
avr 949.2
(2.9) 		957.8
(3) 		819.6
(0.8) 		584.9
(-3) 		373

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 698
1 2 3 4 5 6 range
A 966.3
(3)
P 		887.4
(2)
P 		849
(1.5)
P 		703.7
(-0.3)
P 		607.6
(-1.5)
P 		492.1
(-3)
P 		474
B 1017.1
(3)
P 		905.5
(1.7)
P 		688.7
(-0.8)
P 		687
(-0.8)
P 		676.4
(-1)
P 		500.1
(-3)
P 		517
C 1151.5
(3)
P 		909.7
(0.9)
P 		970.7
(1.4)
P 		664.2
(-1.2)
P 		540.1
(-2.3)
P 		453.6
(-3)
P 		698
avr 1045
(3) 		900.9
(1.5) 		836.1
(0.8) 		685
(-0.8) 		608
(-1.7) 		481.9
(-3) 		563
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 272
1 2 3 4 range
A 355.9
(3)
P 		232.5
(0.2)
P 		214
(-0.2)
P 		92.6
(-3)
P 		263
B 297.6
(3)
P 		229
(0.5)
P 		181.6
(-1.2)
P 		133.3
(-3)
P 		164
C 310.1
(3)
P 		251.6
(1.4)
P 		298.6
(2.7)
P 		83.8
(-3)
P 		226
avr 321.2
(3) 		237.7
(0.7) 		231.4
(0.5) 		103.2
(-3) 		218

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 307
1 2 3 4 5 6 range
A 178.1
(-1.2)
P 		315.6
(3)
P 		184.9
(-1)
P 		178.5
(-1.2)
P 		183.3
(-1.1)
P 		119.8
(-3)
P 		196
B 353.9
(3)
P 		301.4
(1.3)
P 		167.2
(-3)
P 		182
(-2.5)
P 		274.8
(0.5)
P 		186.5
(-2.4)
P 		187
C 426.8
(3)
P 		277.6
(-0.1)
P 		247.1
(-0.7)
P 		133.6
(-3)
P 		174.8
(-2.2)
P 		151.8
(-2.6)
P 		293
avr 319.6
(3) 		298.2
(2.2) 		199.7
(-1.3) 		164.7
(-2.6) 		211
(-0.9) 		152.7
(-3) 		167
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 189933_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4512
Sequence Type Exemplar sequence
Representative Public ID H17B01.1A NCBI
Target Description H17B01.1A /REP_DB=WormBase Gene ID /WP=CE27184 /TR=O44826 /GB=AAK31539.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=sugar transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061580(11), NM_061581(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061580 NCBI Caenorhabditis elegans H17B01.1a (H17B01.1) mRNA, complete cds. 11/11 A 
NM_061581 NCBI Caenorhabditis elegans H17B01.1b (H17B01.1) mRNA, complete cds. 11/11 A 
H17B01.1a ENSEMBL cdna:known chromosome:CEL140:II:1504572:1509828:1 gene:H17B01.1 11/11 None
H17B01.1b ENSEMBL cdna:known chromosome:CEL140:II:1504760:1509693:1 gene:H17B01.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1504572-1506721(+) 100.0 100.0
Public Domain and Genome References
Ensembl H17B01.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31539 Hypothetical protein H17B01.1a [Caenorhabditis elegans] ref|NP_493981.1| H17B01.1a [Caenorhabditis elegans] 0.0
blast AAK31540 Hypothetical protein H17B01.1b [Caenorhabditis elegans] ref|NP_493982.1| H17B01.1b [Caenorhabditis elegans] 0.0
blast CAE62888 Hypothetical protein CBG07075 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005828 EMBL-EBI General substrate transporter 1.0E-126
Pfam IPR005828 EMBL-EBI General substrate transporter 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493981.1 12 27-49,81-103,110-128,138-160,173-192,202-224,281-303,323-345,354-376,389-411,424-446,451-473
NP_493982.1 12 45-67,99-121,128-146,156-178,191-210,220-242,299-321,341-363,372-394,407-429,442-464,469-491
H17B01.1a 12 27-49,81-103,110-128,138-160,173-192,202-224,281-303,323-345,354-376,389-411,424-446,451-473
H17B01.1b 12 45-67,99-121,128-146,156-178,191-210,220-242,299-321,341-363,372-394,407-429,442-464,469-491
Sequence
Target Sequence 
>C. ELEGANS:189933_S_AT
aaaactcacgaaatgcctcgcattctccgcatttgtcatcacactggcctccttccaatt
tggataccatatcggatgtgtaaatgctccaggagggcttatcactgaatggatcatcgg
atcacacaaggatctcttcgacaaggagctcagcagagaaaatgctgatttggcgtccgt
cgcagtatccgtattcgctgttggtggtatgattggaggtctttcctcaggatggttggc
cgataaggtcggaagacgtggagctctgttctacaataatcttttggctctggccgcggc
ggctctgatgggattggctaagtcagttggagcatacccaatggttattttgggaagatt
gattattgggcttaattgtggattctcctcagccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAACTCACGAAATGCCTCGCATTC 342 131 78 Antisense
CTGGCCTCCTTCCAATTTGGATACC 329 241 121 Antisense
GGAGGGCTTATCACTGAATGGATCA 269 517 169 Antisense
GGATCTCTTCGACAAGGAGCTCAGC 498 509 207 Antisense
AGAAAATGCTGATTTGGCGTCCGTC 118 73 234 Antisense
TATCCGTATTCGCTGTTGGTGGTAT 454 657 263 Antisense
GTGGTATGATTGGAGGTCTTTCCTC 662 487 281 Antisense
CTTTCCTCAGGATGGTTGGCCGATA 26 223 298 Antisense
GGAAGACGTGGAGCTCTGTTCTACA 248 531 328 Antisense
GCGGCTCTGATGGGATTGGCTAAGT 603 293 376 Antisense
CTTAATTGTGGATTCTCCTCAGCCC 420 221 448 Antisense
Sequence Source Affymetrix Proprietary Database