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[189931_at] C-type lectin domain

Description C54C8.7 /REP_DB=WormBase Gene ID /WP=CE08970 /TR=O17705 /GB=CAB05461.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=C-type lectin domain
Cluster 6grp_total > 93      4grp_total > 16      6grp_cgc > 88      6grp_total_sub > Hat      6grp_rule_based > S5      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 6.9
(-3)
A 		38.3
(-0.9)
A 		74.6
(1.5)
A 		96.3
(3)
P 		89
B 9.1
(-3)
A 		13.3
(-2.7)
A 		33.5
(-1.1)
A 		84.5
(3)
A 		75
C 33.2
(-3)
A 		39.9
(-2)
A 		49.2
(-0.7)
A 		74.9
(3)
A 		42
avr 16.4
(-3) 		30.5
(-1.8) 		52.4
(0.1) 		85.2
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 256
1 2 3 4 5 6 range
A 15.9
(-3)
A 		46.5
(-2.3)
A 		71.3
(-1.7)
M 		104.6
(-0.9)
P 		272
(3)
P 		98.8
(-1.1)
M 		256
B 18.1
(-3)
A 		53.1
(-1.9)
A 		44.1
(-2.1)
A 		133.3
(0.8)
M 		201.5
(3)
P 		71.6
(-1.2)
P 		183
C 47.9
(-3)
A 		70.5
(-2.1)
A 		54.8
(-2.7)
A 		149.1
(0.9)
A 		205.3
(3)
P 		80.9
(-1.7)
P 		157
avr 27.3
(-3) 		56.7
(-2.1) 		56.7
(-2.1) 		129
(0.1) 		226.3
(3) 		83.8
(-1.3) 		199
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 2.5
(-3)
A 		8.3
(-1)
A 		19.5
(3)
A 		14.1
(1.1)
P 		17
B 2.9
(-3)
A 		3.3
(-2.8)
A 		7.8
(-1.1)
A 		18
(3)
A 		15
C 11
(-3)
A 		11.5
(-2.5)
A 		17.1
(3)
A 		12.6
(-1.4)
A 		6
avr 5.5
(-3) 		7.7
(-1.6) 		14.8
(2.9) 		14.9
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 79
1 2 3 4 5 6 range
A 2.9
(-3)
A 		16.5
(-2)
A 		15.5
(-2)
M 		26.5
(-1.2)
P 		82.1
(3)
P 		24.1
(-1.4)
M 		79
B 6.3
(-3)
A 		17.7
(-2.1)
A 		10.7
(-2.7)
A 		35.3
(-0.7)
M 		81.9
(3)
P 		26.7
(-1.4)
P 		76
C 17.8
(-2.6)
A 		21.5
(-2.1)
A 		13.9
(-3)
A 		30
(-1.2)
A 		66.4
(3)
P 		27.1
(-1.5)
P 		53
avr 9
(-3) 		18.6
(-2.2) 		13.4
(-2.6) 		30.6
(-1.1) 		76.8
(3) 		26
(-1.5) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189931_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.818
Sequence Type Exemplar sequence
Representative Public ID C54C8.7 NCBI
Target Description C54C8.7 /REP_DB=WormBase Gene ID /WP=CE08970 /TR=O17705 /GB=CAB05461.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=C-type lectin domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060761(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060761 NCBI Caenorhabditis elegans C-type LECtin family member (clec-11) (clec-11) mRNA, complete cds. 11/11 None
SNAP00000034212 ENSEMBL cdna:SNAP chromosome:CEL140:I:12467620:12469024:-1 11/11 None
GENEFINDER00000034216 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12467620:12469024:-1 11/11 None
C54C8.7 ENSEMBL cdna:known chromosome:CEL140:I:12467620:12469024:-1 gene:C54C8.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034211 1/11 Cross Hyb Matching Probes None
GENEFINDER00000034214 1/11 Cross Hyb Matching Probes None
C54C8.8 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12467550-12468955(-) 100.0 100.0
Public Domain and Genome References
Gene Title C-type lectin domain
Gene Symbol clec-11
Ensembl C54C8.7
Entrez Gene 183773 Entrez gene
SwissProt O17705 EMBL-EBI
WormBase CE08970 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05461 Hypothetical protein C54C8.7 [Caenorhabditis elegans] ref|NP_493162.1| C-type LECtin family member (clec-11) [Caenorhabditis elegans] 0.0
blast CAA20940 Hypothetical protein H16D19.1 [Caenorhabditis elegans] emb|CAB04713.1| Hypothetical protein T07D10.4 [Caenorhabditis elegans] ref|NP_493197.1| C-type LECtin family member (clec-13) [Caenorhabditis elegans] ref|NP_493196.1| C-type LECtin family member (clec-15) [Caenorhabditis elegans] 1.0E-150
blast CAB04882 Hypothetical protein T27F6.2 [Caenorhabditis elegans] ref|NP_493166.1| C-type LECtin family member (clec-12) [Caenorhabditis elegans] 1.0E-147
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 8.0E-9
Pfam IPR001304 EMBL-EBI C-type lectin 1.6E-16
Pfam IPR000859 EMBL-EBI CUB 4.3E-27
Sequence
Target Sequence 
>C. ELEGANS:189931_AT
tgactacagcctccgttggatggacggctctgcgtgggattacaataacattgatccaat
atatcctaatcgatataactattgtctgcatatgtctacgatcactacttctggatctgg
tttctggtacggggacgattgtagtcttagtagaaagtatgtgtgcaagcgagaagctgg
tgtgccatgcacaactgtgccgccgccagtcactgtaagaccaagctccacaaacccttc
aaattgcaacgccggtctactgatgtctccaggagtattcacttctcccaactatccaca
aaattatttcaataacgagaactgcacttatcaactttcaacactgggatcgtacaggat
tactttaaaatttagcaatttccgcacggaaagcaattatgactttgtttcggtatacga
tggccctacaacgagctctccaagtttgggtcgttacagtggaaacattggttcttttta
cgtgtcgtcgagtgaaaataatatgcttgtaacgttcacatcagatgcaggagtcgtttt
ccaaggattcactgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACTACAGCCTCCGTTGGATGGAC 162 567 681 Antisense
GCATATGTCTACGATCACTACTTCT 16 309 768 Antisense
TGGATCTGGTTTCTGGTACGGGGAC 699 503 792 Antisense
GTCACTGTAAGACCAAGCTCCACAA 659 463 889 Antisense
AATTGCAACGCCGGTCTACTGATGT 266 179 922 Antisense
AGGAGTATTCACTTCTCCCAACTAT 146 57 951 Antisense
ACTGCACTTATCAACTTTCAACACT 164 99 1001 Antisense
TATACGATGGCCCTACAACGAGCTC 592 655 1094 Antisense
ACGAGCTCTCCAAGTTTGGGTCGTT 412 93 1111 Antisense
CATTGGTTCTTTTTACGTGTCGTCG 662 215 1146 Antisense
GAGTCGTTTTCCAAGGATTCACTGC 107 401 1211 Antisense
Sequence Source Affymetrix Proprietary Database