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[189927_at] V. virus protein K4

Description E04F6.4 /REP_DB=WormBase Gene ID /WP=CE01216 /TR=Q19056 /GB=AAA68356.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=V. virus protein K4
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 21      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 52      6grp_total > 41      4grp_total > 62      6grp_highest_sub > 03_04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 703
1 2 3 4 range
A 748.6
(3)
P 		490
(0.4)
P 		505.7
(0.6)
P 		146.1
(-3)
P 		603
B 834.6
(3)
P 		532.7
(0.3)
P 		472.7
(-0.2)
P 		154.9
(-3)
P 		680
C 848.6
(3)
P 		513.9
(-0.1)
P 		590.5
(0.6)
P 		195.2
(-3)
P 		653
avr 810.6
(3) 		512.2
(0.2) 		523
(0.3) 		165.4
(-3) 		645

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 723
1 2 3 4 5 6 range
A 595.5
(0.7)
P 		613.1
(0.8)
P 		842.5
(3)
P 		724.6
(1.9)
P 		264.3
(-2.4)
P 		203.3
(-3)
P 		639
B 607.2
(-0)
P 		835.9
(2.1)
P 		926.7
(3)
P 		660.5
(0.5)
P 		480.7
(-1.2)
P 		296.1
(-3)
P 		631
C 605.7
(0.9)
P 		744.7
(2.4)
P 		576.5
(0.6)
P 		806.5
(3)
P 		425.8
(-1)
P 		229.4
(-3)
P 		577
avr 602.8
(1) 		731.2
(2.4) 		781.9
(3) 		730.5
(2.4) 		390.3
(-1.4) 		242.9
(-3) 		539
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 260
1 2 3 4 range
A 272.6
(3)
P 		106.4
(-1)
P 		132.2
(-0.4)
P 		21.4
(-3)
P 		251
B 266.1
(3)
P 		131.6
(-0.5)
P 		109.5
(-1)
P 		33
(-3)
P 		233
C 280.9
(3)
P 		147.8
(-0.2)
P 		205.8
(1.2)
P 		32.9
(-3)
P 		248
avr 273.2
(3) 		128.6
(-0.6) 		149.2
(-0) 		29.1
(-3) 		244

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 229
1 2 3 4 5 6 range
A 109.8
(-0.9)
P 		218.1
(3)
P 		183.5
(1.8)
P 		183.8
(1.8)
P 		79.8
(-1.9)
P 		49.5
(-3)
P 		169
B 211.3
(0.6)
P 		278.2
(3)
P 		225
(1.1)
P 		175
(-0.7)
P 		195.3
(0)
P 		110.4
(-3)
P 		168
C 224.5
(2.9)
P 		227.2
(3)
P 		146.7
(-0.2)
P 		162.2
(0.4)
P 		137.8
(-0.6)
P 		76.8
(-3)
P 		150
avr 181.9
(0.8) 		241.2
(3) 		185.1
(0.9) 		173.7
(0.5) 		137.6
(-0.8) 		78.9
(-3) 		162
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189927_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5243
Sequence Type Exemplar sequence
Representative Public ID E04F6.4 NCBI
Target Description E04F6.4 /REP_DB=WormBase Gene ID /WP=CE01216 /TR=Q19056 /GB=AAA68356.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=V. virus protein K4
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063091(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063091 NCBI Caenorhabditis elegans E04F6.4 (E04F6.4) mRNA, complete cds. 11/11 None
SNAP00000032889 ENSEMBL cdna:SNAP chromosome:CEL140:II:7189367:7192350:1 11/11 None
GENEFINDER00000032905 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7189367:7192350:1 11/11 None
E04F6.4 ENSEMBL cdna:known chromosome:CEL140:II:7189351:7192438:1 gene:E04F6.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7189362-7192346(+) 100.0 100.0
Public Domain and Genome References
Gene Title V. virus protein K4
Ensembl E04F6.4
Entrez Gene 174179 Entrez gene
SwissProt Q19056 EMBL-EBI
WormBase CE01216 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68356 Hypothetical protein E04F6.4 [Caenorhabditis elegans] ref|NP_495492.1| E04F6.4 [Caenorhabditis elegans] 0.0
blast CAE67557 Hypothetical protein CBG13083 [Caenorhabditis briggsae] 0.0
blast CAD56614 Hypothetical protein Y51A2D.13b [Caenorhabditis elegans] ref|NP_872145.1| Y51A2D.13b [Caenorhabditis elegans] 3.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR001736 EMBL-EBI Phospholipase D/Transphosphatidylase 1.4E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495492.1 1 21-43
E04F6.4 1 21-43
SNAP00000032889 1 21-43
GENEFINDER00000032905 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:189927_AT
gtaatgcaatatttcccttcatggatctattttaagaatagagagttcttctctcaaatc
gataatgccatccgaatgagtgtttctcgtggaattaaattccgaatacttgtatctgga
gatcaaaaagaagaagaaaaacttatgttttcctgtttgcatagtctttctgttttacat
tctccaacggaaaatagaaatattcaagtgaagttcattttaattccacaaaccgctcaa
gaagcttataaagatcgtaagatgcatgcaaaattcatgatttccgaatcaagaaccttc
attggttcatcgaattatggacctgaatacttttacaaatcaactggaactgcaattatt
gtagacgaagaaccacattatggagatatcaatagacaaataaaagctgtatttgaacga
tactggcatagcacgtactcacaaaaacttcaaaaatacggtgaatcaaaaggttatctt
ccaaaaatttcaaaaccatcgaacccattctccggatggtttgggtttgatcaaatagga
gtatttaatgagaaatactctgctgacggactag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAATGCAATATTTCCCTTCATGGA 112 463 1291 Antisense
GTTCTTCTCTCAAATCGATAATGCC 518 443 1335 Antisense
AATGCCATCCGAATGAGTGTTTCTC 458 167 1354 Antisense
GTTTTCCTGTTTGCATAGTCTTTCT 143 449 1437 Antisense
GTCTTTCTGTTTTACATTCTCCAAC 422 469 1454 Antisense
ATTTTAATTCCACAAACCGCTCAAG 13 15 1507 Antisense
GATTTCCGAATCAAGAACCTTCATT 294 427 1569 Antisense
ATGGACCTGAATACTTTTACAAATC 144 51 1607 Antisense
GATACTGGCATAGCACGTACTCACA 124 425 1709 Antisense
ATCGAACCCATTCTCCGGATGGTTT 307 33 1788 Antisense
GAGAAATACTCTGCTGACGGACTAG 391 391 1840 Antisense
Sequence Source Affymetrix Proprietary Database