[Home] | [Total List]

[189926_at] zinc finger protein

Description T07D10.3 /REP_DB=WormBase Gene ID /WP=CE13379 /TR=O02303 /GB=CAB04715.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster 6grp_total > 94      4grp_total > 57      6grp_total_sub > Hat      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 44
1 2 3 4 range
A 22.8
(-0.9)
A 		50.1
(3)
A 		20.1
(-1.2)
A 		7.6
(-3)
A 		43
B 10.4
(-2.4)
A 		16.2
(-1.6)
A 		49.3
(3)
A 		6.1
(-3)
A 		43
C 12.2
(-2.1)
A 		20.6
(-0.8)
A 		44.4
(3)
A 		6.7
(-3)
A 		38
avr 15.1
(-1.4) 		29
(1.3) 		37.9
(3) 		6.8
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 10.8
(-2.3)
A 		2.6
(-3)
A 		14.1
(-2)
A 		19.2
(-1.5)
A 		68.6
(3)
P 		55.4
(1.8)
P 		66
B 5.2
(-3)
A 		19
(-1.8)
A 		7.8
(-2.8)
A 		9.3
(-2.7)
A 		75.9
(3)
M 		24.5
(-1.4)
A 		71
C 4.2
(-3)
A 		34.4
(-1.7)
A 		19.4
(-2.4)
A 		73.7
(-0.1)
A 		146.4
(3)
P 		24.8
(-2.1)
A 		142
avr 6.7
(-3) 		18.7
(-2.2) 		13.8
(-2.5) 		34.1
(-1.2) 		97
(3) 		34.9
(-1.1) 		90
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 8.3
(1.4)
A 		10.9
(3)
A 		5.3
(-0.4)
A 		1.1
(-3)
A 		10
B 3.3
(-1.8)
A 		4
(-1.4)
A 		11.4
(3)
A 		1.3
(-3)
A 		10
C 4
(-1.8)
A 		5.9
(-1)
A 		15.5
(3)
A 		1.1
(-3)
A 		14
avr 5.2
(-0.5) 		6.9
(0.6) 		10.7
(3) 		1.2
(-3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 2
(-2.7)
A 		0.9
(-3)
A 		3.1
(-2.3)
A 		4.9
(-1.8)
A 		20.7
(3)
P 		13.5
(0.8)
P 		20
B 1.8
(-3)
A 		6.3
(-2.1)
A 		1.9
(-3)
A 		2.5
(-2.9)
A 		30.8
(3)
M 		9.1
(-1.5)
A 		29
C 1.6
(-3)
A 		10.5
(-1.8)
A 		4.9
(-2.6)
A 		14.8
(-1.3)
A 		47.4
(3)
P 		8.3
(-2.1)
A 		46
avr 1.8
(-3) 		5.9
(-2.2) 		3.3
(-2.7) 		7.4
(-1.9) 		33
(3) 		10.3
(-1.4) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 189926_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.451
Sequence Type Exemplar sequence
Representative Public ID T07D10.3 NCBI
Target Description T07D10.3 /REP_DB=WormBase Gene ID /WP=CE13379 /TR=O02303 /GB=CAB04715.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation /DEF=zinc finger protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060793(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060793 NCBI Caenorhabditis elegans T07D10.3 (T07D10.3) mRNA, complete cds. 11/11 A 
SNAP00000024092 ENSEMBL cdna:SNAP chromosome:CEL140:I:12634863:12637118:-1 11/11 None
GENEFINDER00000024103 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12634863:12637118:-1 11/11 None
T07D10.3 ENSEMBL cdna:known chromosome:CEL140:I:12634863:12637118:-1 gene:T07D10.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12646781-12648529(+) 65.94 65.94
chrI:12634793-12637049(-) 97.26 100.0
Public Domain and Genome References
Gene Title zinc finger protein
Ensembl T07D10.3
Entrez Gene 188228 Entrez gene
SwissProt O02303 EMBL-EBI
WormBase CE34209 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04715 Hypothetical protein T07D10.3 [Caenorhabditis elegans] ref|NP_493194.2| T07D10.3 [Caenorhabditis elegans] 0.0
blast CAA20942 Hypothetical protein H16D19.3 [Caenorhabditis elegans] ref|NP_493199.1| H16D19.3 [Caenorhabditis elegans] 1.0E-120
blast CAA20942 Hypothetical protein H16D19.3 [Caenorhabditis elegans] ref|NP_493199.1| H16D19.3 [Caenorhabditis elegans] 2.0E-89
blast NP_001021749 Y37F4.6 [Caenorhabditis elegans] 5.0E-15
blast NP_001021749 Y37F4.6 [Caenorhabditis elegans] 2.0E-14
Sequence
Target Sequence 
>C. ELEGANS:189926_AT
attgcttgcaaatgtggtcaccaattcaagtattgctattaccaacgtgacgtgctttta
cgaaacctgccagttttacgtgaagccatggagcatgtggagcgagaggctccgttcaat
aatatgcccgaagatgtgtgcaatatctaccgatccataattgtggtgatcattgatgtg
aatcaacgtcttatcaacgagaaattcacaaattatcagcgaacaagcccactgaaacat
tcctcgtttacgccacgacagatggccaagctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGCTTGCAAATGTGGTCACCAAT 155 7 796 Antisense
ATTGCTATTACCAACGTGACGTGCT 484 5 827 Antisense
GACGTGCTTTTACGAAACCTGCCAG 204 377 844 Antisense
AACCTGCCAGTTTTACGTGAAGCCA 253 109 859 Antisense
GCATGTGGAGCGAGAGGCTCCGTTC 414 311 888 Antisense
GCTCCGTTCAATAATATGCCCGAAG 383 299 904 Antisense
GATGTGTGCAATATCTACCGATCCA 179 409 928 Antisense
GATGTGAATCAACGTCTTATCAACG 293 407 970 Antisense
GAACAAGCCCACTGAAACATTCCTC 656 351 1016 Antisense
ACTGAAACATTCCTCGTTTACGCCA 579 93 1026 Antisense
ACGCCACGACAGATGGCCAAGCTCT 136 85 1045 Antisense
Sequence Source Affymetrix Proprietary Database